PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_02773.1_g00006.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

TCP

Protein Properties

Length: 349aa MW: 37646.9 Da PI: 9.3133

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_02773.1_g00006.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.1	9.1e-40	38	161	5	89
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg. 88 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+i+++tgt++++a+++ ++s +ss+ + s++ Sme2.5_02773.1_g00006.1 38 KKPSKDRHTKVDGRGRRIRMPALCAARVFQLTKELGHKSDGETIEWLLQQAEPSIIAATGTGTIPANFStLNVSLRSSGTTISAPp 123 899***************************************************************99987777777777444445 PP TCP 89 .....................................k 89 k Sme2.5_02773.1_g00006.1 124 sksaplfihggptamlgfhhqlpgnsfgqdpdenfmkK 161 55666777777777777776676777654333222220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.2E-38	41	187	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.652	41	95	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MEFRESHAKN QDGGSNSSNN NNNSSDNNNN AISTKVVKKP SKDRHTKVDG RGRRIRMPAL 60 CAARVFQLTK ELGHKSDGET IEWLLQQAEP SIIAATGTGT IPANFSTLNV SLRSSGTTIS 120 APPSKSAPLF IHGGPTAMLG FHHQLPGNSF GQDPDENFMK KRYREETTAA TTSPSSSSAK 180 PERTGVQGRE PDQESKPGSS NTSSYIPAPA MWAVAPAAGN VGNTFWMLPG TSSTRIGGFE 240 LPVGGRFSPV QLGSMFLQQP QPVQQLGLGV TETNMGMLAS MNAYNSSNSK GSGIDLGMNL 300 EQHHHQNHPQ GYDDVYLIPL IDKSNPDPKQ LIKAWQHSEI VRKEKASVE

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MEFRESHAKN QDGGSNSSNN NNNSSDNNNN AISTKVVKKP SKDRHTKVDG RGRRIRMPAL  60
CAARVFQLTK ELGHKSDGET IEWLLQQAEP SIIAATGTGT IPANFSTLNV SLRSSGTTIS  120
APPSKSAPLF IHGGPTAMLG FHHQLPGNSF GQDPDENFMK KRYREETTAA TTSPSSSSAK  180
PERTGVQGRE PDQESKPGSS NTSSYIPAPA MWAVAPAAGN VGNTFWMLPG TSSTRIGGFE  240
LPVGGRFSPV QLGSMFLQQP QPVQQLGLGV TETNMGMLAS MNAYNSSNSK GSGIDLGMNL  300
EQHHHQNHPQ GYDDVYLIPL IDKSNPDPKQ LIKAWQHSEI VRKEKASVE

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC209513	0.0	AC209513.1 Solanum lycopersicum chromosome 6 clone C06HBa0286N17, complete sequence.
GenBank	AC211087	0.0	AC211087.2 Solanum lycopersicum chromosome 6 clone C06SLm0132E21, complete sequence.
GenBank	GQ496331	0.0	GQ496331.1 Solanum lycopersicum TCP transcription factor 13 (TCP13) mRNA, complete cds.
GenBank	HG975518	0.0	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016574858.1	0.0	PREDICTED: transcription factor TCP8
Swissprot	Q9C518	3e-67	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A1U8H1B2	0.0	A0A1U8H1B2_CAPAN; transcription factor TCP8
STRING	Solyc06g065190.1.1	1e-172	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	3e-55	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]