PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02771.1_g00010.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 368aa    MW: 40300 Da    PI: 8.7926
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02771.1_g00010.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.3e-121642127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                             ++ + C++++r+G C yG++C+F+H++
  Sme2.5_02771.1_g00010.1 16 PGVPDCSYYMRNGSCGYGPNCRFNHPR 42
                             5789*********************96 PP
2zf-CCCH38.81.5e-126489227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                             +++ C++++rtGtCk+G +CkF+H++
  Sme2.5_02771.1_g00010.1 64 GEPTCQYYLRTGTCKFGVSCKFHHPR 89
                             5789********************96 PP
3zf-CCCH34.63.3e-11111135327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              + +C ++++tG+Ck+G +CkF+H++
  Sme2.5_02771.1_g00010.1 111 ETECTYYLKTGHCKFGITCKFHHPQ 135
                              679********************97 PP
4zf-CCCH38.12.7e-12266291227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              ++++C+++ +tG Ck+G++CkF+H+p
  Sme2.5_02771.1_g00010.1 266 GQSICQYYVKTGDCKFGSSCKFHHPP 291
                              7899********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.7E-71542IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8681543IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-91742IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-61943IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-52142IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-56289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8316290IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-106489IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-66590IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-56889IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408108136IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-5108135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6110136IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8111135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4114134IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-6264291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.854264292IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9266291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6267292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-6268290IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MQKLGLFGRE IYPERPGVPD CSYYMRNGSC GYGPNCRFNH PRDRDHGYDG KMQLGGVEFP  60
ERMGEPTCQY YLRTGTCKFG VSCKFHHPRN FDGTLSNIPL NSYGYPLRTG ETECTYYLKT  120
GHCKFGITCK FHHPQPAGIS VPAPARPFYP TVQSLPAPPE EYNSALTGLR VARPPLLPGS  180
YVPSAYGPVL LHPGVVTIPN WSPYSGPVSP ALSPGAQPSA GLTSVYGISQ LASSTHAFTG  240
PYLPLPPAAS PSSKTQKEKS FPERPGQSIC QYYVKTGDCK FGSSCKFHHP PDWIASRTNC  300
AFSPLGLPLR PVLMCYRFVI NEAALSVSFS FIDNREILEG PSTVLKLVDN RPASLVISPY  360
TARLFSAT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755211e-138HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247451.40.0LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 32
RefseqXP_027767727.10.0LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 32
SwissprotQ84W911e-134C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A3Q7J1850.0A0A3Q7J185_SOLLC; Uncharacterized protein
STRINGSolyc09g074640.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66222034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-133C3H family protein