PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02545.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 462aa    MW: 51140.1 Da    PI: 6.3944
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02545.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.72.4e-39612102136
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssa 70 
                               g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG d++sk +eWLl++a p+i el+ +                 ++++ 
  Sme2.5_02545.1_g00001.1  61 SGGKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGCDQPSKVVEWLLKAAAPSIAELPPLeafqdtlqlsdekrssvGTEPG 146
                              689*************************************************************7666666554433322211111 PP

                      TCP  71 seceaesssssasnsssgkaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136
                                  ++ ++++++ +++++++++ ++ ++s++s+ s l+l++ +sr kar+rarer +ek + k+++
  Sme2.5_02545.1_g00001.1 147 ---FDSPDVEMDDDPNNSQQQQQPPCCSNSETSKVSGLSLSRsDSRLKARERARERATEKEKEKENK 210
                              ...222233333344444667777799999999999******9************999999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-3962206IPR005333Transcription factor, TCP
PROSITE profilePS5136930.95863121IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.733186205IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MAMEEIQSEE CKFPRMSNKE DEQYQYDGDD AGEVKKSTDL GGLGNLYGWP SSRIVRVSRA  60
SGGKDRHSKV LTSKGLRDRR VRLSVNTAIQ FYDLQDRLGC DQPSKVVEWL LKAAAPSIAE  120
LPPLEAFQDT LQLSDEKRSS VGTEPGFDSP DVEMDDDPNN SQQQQQPPCC SNSETSKVSG  180
LSLSRSDSRL KARERARERA TEKEKEKENK SSIIAHHQNI HPSSSFTELL TGGMSDNNNN  240
NHSNTSPNGS IHQSMPRQWS TNPLEYFTSG LLGPSSTRGI DNSTGFSGGQ IYLGSSLQPL  300
TAVSSPMFSI SGDHQPELHH FPFGGDNLVP VVTSSEGSNC NTNNEYNLNF SISGFNRGTL  360
QSNSSSLPST LPHFQRFDGS QSLFQGTTTE YDARLHLFYG NGYGHDSRHS DQKRKNYDLL  420
SSSRADRINN RSLYCPIFIH GARFPGNGDR LFAWFPSCLA CL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2068122155Putative transcription factor PCF6
5zkt_B1e-2068122155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00063PBMTransfer from AT4G18390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016557428.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_016557429.10.0PREDICTED: transcription factor TCP2-like
TrEMBLA0A2G3BRT60.0A0A2G3BRT6_CAPCH; Uncharacterized protein
STRINGSolyc08g048390.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.24e-37TCP family protein