PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02186.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 327aa    MW: 37250.3 Da    PI: 10.2918
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02186.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.65.6e-351272443132
                      TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 
                              +++++ ski T++g+RdRRvRls++ a++fFdLq+ LGfdk+skt++WL++ +k ai+el + s+ + ++             +++
  Sme2.5_02186.1_g00004.1 127 KREKSCSKILTAQGPRDRRVRLSITMARKFFDLQELLGFDKPSKTVDWLFTHSKIAIDELSNWSTRQTHHP------------KNS 200
                              678899********************************************************955555222............222 PP

                      TCP  89 kaaksaakskksqksaasalnlakesrakarararertrekmri 132
                               a++++ ++ + ++ +++   + ke rakarararert +km  
  Sme2.5_02186.1_g00004.1 201 GAKNDQGSEINLKRAKEKEEVPLKELRAKARARARERTIKKMWG 244
                              222222233333333333479999*****************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.75125186IPR017887Transcription factor TCP subgroup
PfamPF036346.5E-28133204IPR005333Transcription factor, TCP
PROSITE profilePS5137010.57224241IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MTPLGDVEEG LGTILVRWFT TEPTTARGRS HGGHPLRPTQ NIFKATHHGS CNNSTENPFP  60
LQCTSSSFHN SSPFLGLSGN QILLHQYYQN QFSSLYLAKD MSFPPNNQYH CDNSLRSSFP  120
IKKIPKKREK SCSKILTAQG PRDRRVRLSI TMARKFFDLQ ELLGFDKPSK TVDWLFTHSK  180
IAIDELSNWS TRQTHHPKNS GAKNDQGSEI NLKRAKEKEE VPLKELRAKA RARARERTIK  240
KMWGKIESSH RSANFFGKKD IRVMEEEFLK KKLQANKEII EGSGLTKTKM KPSFNLCFHP  300
NLYSPIESGT CYDTSSINNG DFDITSL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010317815.11e-125transcription factor CYCLOIDEA
TrEMBLA0A1S3ZDU96e-99A0A1S3ZDU9_TOBAC; transcription factor CYCLOIDEA-like
TrEMBLA0A1U7YYF66e-99A0A1U7YYF6_NICSY; transcription factor CYCLOIDEA-like
STRINGXP_009803760.11e-99(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43332244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-21TCP domain protein 12