PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_02180.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 286aa    MW: 31357.8 Da    PI: 10.0157
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_02180.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.42.7e-3061187389
                      TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssas 83 
                              g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WL+ + k +i++l+ ++ +++s +     +++++ ++++
  Sme2.5_02180.1_g00004.1  61 GGKDRHSKVCTVKGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIDATKNEIDKLPPLQMPPPSLShffnmKDHQDFVETG 146
                              78*************************************************************88888333334344444444444 PP

                      TCP  84 nsssg...................................k 89 
                              ++++g                                    
  Sme2.5_02180.1_g00004.1 147 FPTNGdhflqssnlgmlntfnntntnalispnsnlslgpfG 187
                              44444555533344444444444444444444445555552 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-2662125IPR005333Transcription factor, TCP
PROSITE profilePS5136929.47962120IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MNSRKQETSG GDTNYSKILS STTTTTATTT TTPSSSSSRQ SSSWAAGFKN PRIVRVSPNF  60
GGKDRHSKVC TVKGLRDRRI RLSVPTAIQL YDLQDRLGLS QPSKVVDWLI DATKNEIDKL  120
PPLQMPPPSL SHFFNMKDHQ DFVETGFPTN GDHFLQSSNL GMLNTFNNTN TNALISPNSN  180
LSLGPFGNYR SSFSSSQNQC PQHNMSPFPS GSHHQQLYFC PSSSTSATTL PSLVPPYNSS  240
QLNHFHPNSL MPTLQLISTP VKSSFSLNDN NKGLNLQAHH KEGTGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2067121155Putative transcription factor PCF6
5zkt_B3e-2067121155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4963241e-112GQ496324.1 Solanum lycopersicum TCP transcription factor 6 (TCP6) mRNA, complete cds.
GenBankHG9755181e-112HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354751.11e-118PREDICTED: transcription factor TCP5-like
TrEMBLM0ZY341e-116M0ZY34_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000104531e-117(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5