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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_02064.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | TCP | ||||||||
Protein Properties | Length: 260aa MW: 27088.4 Da PI: 9.1575 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 120.4 | 2.1e-37 | 31 | 113 | 3 | 86 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s ++s s s Sme2.5_02064.1_g00003.1 31 VKKPPAKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFStVSVSLRNSIS--S 113 799*****************************************************************87753334333333..2 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.675 | 36 | 90 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 9.6E-35 | 36 | 125 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MATSVEPNGG VLLDSSGSGG VATNSNVALK VKKPPAKDRH SKVDGRGRRI RMPIVCAARV 60 FQLTRELGHK SDGQTIEWLL RQAEPSIIAA TGTGTIPASF STVSVSLRNS ISSVSVSAPV 120 DHKSLSVPSP SLLHPLISPA PFLLGKRLRS EEDDGGSGDK DVGPTAGFWA VPARSDYGQV 180 WSFAAPPPEM VVPTHSAAAA AGVLNSQASR FIQQQMEEAS AGRVGNYFPI AQGHLNLLAS 240 LSGSGTEPPP SSGRRDDDGH |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC239435 | 0.0 | AC239435.2 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-305j13 map 1, complete sequence. | |||
GenBank | GQ496333 | 0.0 | GQ496333.1 Solanum lycopersicum TCP transcription factor 15 (TCP15) mRNA, complete cds. | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001233810.1 | 1e-147 | TCP transcription factor 15 | ||||
Swissprot | Q9FMX2 | 1e-80 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | G3BGV5 | 1e-146 | G3BGV5_SOLLC; TCP transcription factor 15 | ||||
STRING | Solyc01g008230.2.1 | 1e-147 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3951 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 1e-65 | TCP family protein |