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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01564.1_g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | TCP | ||||||||
Protein Properties | Length: 138aa MW: 14924.1 Da PI: 8.9628 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 68.3 | 2.6e-21 | 1 | 60 | 24 | 83 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 ++a+caar+F+L++eLG+++ ++ti+WLl+ a+p+i ++g + ++ +e ++ s ++ + Sme2.5_01564.1_g00010.1 1 MPATCAARVFQLTRELGHKTEGETIQWLLERAEPSINSINGAPKIPTTENTDTSTRKRKR 60 9*****************************************666663332222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 18.074 | 1 | 39 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.1E-17 | 1 | 67 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MPATCAARVF QLTRELGHKT EGETIQWLLE RAEPSINSIN GAPKIPTTEN TDTSTRKRKR 60 CDCGNVKLSN NHPIRVNQPN NAATILAPVM VPSQTILPVG SMCSVPARIN SVNGVVNSAN 120 TIDNINKAKC RTGELCQC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 2e-39 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006339498.1 | 4e-51 | PREDICTED: transcription factor TCP9 | ||||
Swissprot | O64647 | 1e-20 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | M1DWQ3 | 1e-49 | M1DWQ3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400095626 | 2e-50 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 5e-23 | TCP family protein |