PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_01497.1_g00008.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

TCP

Protein Properties

Length: 514aa MW: 58475.4 Da PI: 6.973

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_01497.1_g00008.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	83.5	5.2e-26	107	226	1	111
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssaseceaesss 79 a+g+kdrhsk++T+ g++dRRvRls ++a++f+d+qd+LG+d++sk+ +WL+++a++ai +l +t + e+ ++ Sme2.5_01497.1_g00008.1 107 ATGRKDRHSKVSTATGPKDRRVRLSPNTAIQFYDVQDRLGYDRPSKAMDWLIKEAQRAINALEKTpfqvfsrKI------ESTNKA 186 589**************************************************************555444322......222222 PP TCP 80 ssasnsssg..........kaaksaakskksqksaasalnla 111 +++n +++ +a k+++ + +++s++ +n Sme2.5_01497.1_g00008.1 187 LNGQNAENKegqyapeqswSADKKTELEALAHHSSK--HNAT 226 222211111122333333322222222222222222..2222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.6E-23	108	233	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.8	110	168	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MNHQLQVSNE KEDKSSSSQE EEEEEKNDEC FQENVQQILQ SEYQSNQHLQ QWPNYFTPPS 60 ATLVPNHQNN TQCPSPKEET KKVSLERKLK RAKQDVMEVH RSGIVRATGR KDRHSKVSTA 120 TGPKDRRVRL SPNTAIQFYD VQDRLGYDRP SKAMDWLIKE AQRAINALEK TPFQVFSRKI 180 ESTNKALNGQ NAENKEGQYA PEQSWSADKK TELEALAHHS SKHNATIQYS ADQFPEGSYK 240 EQSSKVCQAN ASHIENLNLC SSVNGSKIQS FCELLTYPQA HFHSETKKQP TNDAKIQSFC 300 ELQTYSQAHF HSETKKQPAN DAKIQSFCEL QTYPQGHFPS ETKKQSAKGA KIQSFCELQT 360 YPQGHFPSET KKQSAKVAKI QSFCQLQTYP QSHFHSETKN QSVQLGNFFN FQSSHQNESI 420 SFSSDHHQDL SFSPQNFPTV LGQNQMFNYQ REPLQSCSDF PLTISYSNNI GFANGGLLEL 480 CTAPTIQEQE EEQQGKLSTT LSAINATTLL HYQD

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MNHQLQVSNE KEDKSSSSQE EEEEEKNDEC FQENVQQILQ SEYQSNQHLQ QWPNYFTPPS  60
ATLVPNHQNN TQCPSPKEET KKVSLERKLK RAKQDVMEVH RSGIVRATGR KDRHSKVSTA  120
TGPKDRRVRL SPNTAIQFYD VQDRLGYDRP SKAMDWLIKE AQRAINALEK TPFQVFSRKI  180
ESTNKALNGQ NAENKEGQYA PEQSWSADKK TELEALAHHS SKHNATIQYS ADQFPEGSYK  240
EQSSKVCQAN ASHIENLNLC SSVNGSKIQS FCELLTYPQA HFHSETKKQP TNDAKIQSFC  300
ELQTYSQAHF HSETKKQPAN DAKIQSFCEL QTYPQGHFPS ETKKQSAKGA KIQSFCELQT  360
YPQGHFPSET KKQSAKVAKI QSFCQLQTYP QSHFHSETKN QSVQLGNFFN FQSSHQNESI  420
SFSSDHHQDL SFSPQNFPTV LGQNQMFNYQ REPLQSCSDF PLTISYSNNI GFANGGLLEL  480
CTAPTIQEQE EEQQGKLSTT LSAINATTLL HYQD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-17	115	168	1	54	Putative transcription factor PCF6
5zkt_B	1e-17	115	168	1	54	Putative transcription factor PCF6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016443396.1	4e-85	PREDICTED: transcription factor TCP3-like
TrEMBL	M1CJ41	0.0	M1CJ41_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400068478	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15569	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	1e-32	TCP domain protein 10