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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01461.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 197aa MW: 21989.4 Da PI: 8.0573 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 36 | 1.4e-11 | 177 | 197 | 2 | 22 |
--SS-EEEEEEE--TT-SS-E CS WRKY 2 dDgynWrKYGqKevkgsefpr 22 +Dgy+WrKYGqK vk+s+fpr Sme2.5_01461.1_g00006.1 177 EDGYRWRKYGQKAVKNSPFPR 197 8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.8E-12 | 161 | 197 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.18E-9 | 168 | 197 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.804 | 171 | 197 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-7 | 177 | 197 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MGIGGGINTF PFFGENPSNY DQPIIPNIQN PNHEHQQFVP SSYMTLTECL HGSMDYNTLS 60 SAFGMSCSSS SEVVCPHIDN QDSTRKNNIY PTAKPVLDSP IKDQMNIEIP RTPNSSISST 120 SNEAGGQEDS SKIKKKEGQE EGEDKSKKES KGKKKGEKKV KEARFAFMTK SEIDNLEDGY 180 RWRKYGQKAV KNSPFPR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975524 | 2e-67 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006350002.1 | 2e-98 | PREDICTED: probable WRKY transcription factor 71 | ||||
Swissprot | O22900 | 7e-21 | WRK23_ARATH; WRKY transcription factor 23 | ||||
TrEMBL | A0A2G2YT55 | 1e-110 | A0A2G2YT55_CAPAN; Putative WRKY transcription factor 23 | ||||
STRING | PGSC0003DMT400020102 | 8e-98 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1485 | 24 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 4e-18 | WRKY DNA-binding protein 57 |
Publications ? help Back to Top | |||
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