PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00650.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 645aa    MW: 71954.6 Da    PI: 5.4015
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00650.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox283.7e-094114481954
                              HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  Sme2.5_00650.1_g00002.1 411 FEHflHPYPKDSDKIMLARQTGLTRNQVSNWFINARVR 448
                              554459******************************88 PP
2BELL122.22.2e-39273344172
                     BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                              e+qe+q+k +kLls+l+e+d+rY+qy++q+q+++ssF+++ag g+akpYt+lAl++iSrhFrcL+dai++qi
  Sme2.5_00650.1_g00002.1 273 EKQEVQNKLTKLLSMLDEIDRRYRQYYHQMQIMVSSFDVIAGDGAAKPYTALALRTISRHFRCLRDAICDQI 344
                              689********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.0E-58195342IPR006563POX domain
PfamPF075261.5E-49201340IPR006563POX domain
PROSITE profilePS5007112.195389452IPR001356Homeobox domain
SMARTSM003891.8E-9392456IPR001356Homeobox domain
CDDcd000867.57E-12392453No hitNo description
SuperFamilySSF466895.13E-17393459IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-28395458IPR009057Homeodomain-like
PfamPF059206.2E-18409448IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MATYFPSPNN QRDADQTFQY FRPSLPDSYP EASNAQENMM VFMNYSPSGA YSDMLTATSQ  60
QQHSCIDIPP VGATCSNTSQ QEMLSNLGGS RMGIQDFSSW RDSRNEMLTD SVFQVASNVQ  120
GQGLSLTLGS NISSRFGISH VQSQNPNEGG GFNMSFGDGD DSRPKEQRNA DYLPADYPSS  180
NSDAMQGYNS PYGTLSIART IPSSKYLKAA QYLLDEVVSV RKAIKEQNSK KELTKDSREA  240
DGDSKNKSSD PPANGGSNPH ESKNNQSELS ATEKQEVQNK LTKLLSMLDE IDRRYRQYYH  300
QMQIMVSSFD VIAGDGAAKP YTALALRTIS RHFRCLRDAI CDQIRASRRS LGEQDASENS  360
KAIGISRLRF VDQHIRQQRA LQQLGMMQQH AWRPQRGLPE SSVSVLRAWL FEHFLHPYPK  420
DSDKIMLARQ TGLTRNQVSN WFINARVRLW KPMVEEMYKE EADDGKIDSN SSSEIAPRLA  480
TKDSKIEDRE ELHQNAASEV EQYHSGQILE SKSNHEADVE MEGESNVETQ SRSGMKNQTG  540
EPLPAMDNCT LFQDAFVHSN NRLSEFGSFG SGHVLSNGVS LTLGLQQGEG SNLPMSIETH  600
VSYVPLRADD MCSSVPTTMV PETAEFNCLD SGNRQHPFWL LPSAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-15398456563Homeobox protein Meis2
3k2a_B1e-15398456563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4067030.0AF406703.1 Solanum tuberosum BEL1-related homeotic protein 30 (Bel30) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362026.10.0PREDICTED: BEL1-related homeotic protein 30 isoform X1
SwissprotO656851e-126BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLM1D1Z20.0M1D1Z2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000795170.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102052226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-128BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]