PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00592.1_g00010.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

TCP

Protein Properties

Length: 323aa MW: 35691.3 Da PI: 6.1822

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00592.1_g00010.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.2	6.9e-39	62	208	2	136
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaess 78 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG d++sk++eWLl++a p+i el+ + s +++ Sme2.5_00592.1_g00010.1 62 SGGKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGCDQPSKAVEWLLKAAAPSIAELPPLeafpdtlqlS---------DDK 138 689***********************************************************5444433331.........112 PP TCP 79 sssasnsssg...............kaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136 +ss++ + + ++++++ ++s++s+ s l+l++ +sr kar+ra+er +ek + k+++ Sme2.5_00592.1_g00010.1 139 RSSVG----TepgfdsadvemdddpNCNQQQPSCSNSETSKGSGLSLSRsDSRLKARERAKERVTEKEKEKENK 208 22221....01122344455666634444444889999999999*9**********999999988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-38	63	204	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.167	64	122	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	9.142	184	203	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MEMEEIQTDE CKFPRMNNKE DEQYHQYEVD DAGVVKKSSG LGGIVKFYGR PSSRIVRVSR 60 ASGGKDRHSK VLTSKGLRDR RVRLSVNTAI QFYDLQDRLG CDQPSKAVEW LLKAAAPSIA 120 ELPPLEAFPD TLQLSDDKRS SVGTEPGFDS ADVEMDDDPN CNQQQPSCSN SETSKGSGLS 180 LSRSDSRLKA RERAKERVTE KEKEKENKSS IVAHHQNMHS SSSFTELLTS GMSDNNNNNH 240 SNTSPNGSIH QSTPRQWSTN PLEYFTSGLL GPASTRGIDN STGFSVECPT TRWDITFDAN 300 KQPTVVSSTA LFLLLARGGD FGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	5e-21	69	123	1	55	Putative transcription factor PCF6
5zkt_B	5e-21	69	123	1	55	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179, ECO:0000269\|PubMed:26596765}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:26596765}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006355409.1	1e-169	PREDICTED: transcription factor TCP2-like isoform X2
Swissprot	Q93V43	3e-52	TCP2_ARATH; Transcription factor TCP2
TrEMBL	G3BGW3	1e-158	G3BGW3_SOLLC; TCP transcription factor 24
STRING	Solyc08g048390.1.1	1e-157	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2464	22	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30210.2	7e-40	TCP family protein

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375]