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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00589.1_g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | TCP | ||||||||
Protein Properties | Length: 481aa MW: 53231.7 Da PI: 6.7998 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.7 | 2.5e-35 | 130 | 256 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssasec....eae 76 g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++ + ++ ++c +++ Sme2.5_00589.1_g00013.1 130 GRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELDELppwkpttgEYDDDNNCkvvgSSS 215 89*************************************************************99888777444445564332111 PP TCP 77 sssssasnsssg..............................k 89 ++ +sas+s g Sme2.5_00589.1_g00013.1 216 KRANSASSS--GengngngsslppsldsdaisdtiksffpmgG 256 111111111..12233345556666666555555444444441 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.8E-32 | 130 | 274 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.273 | 131 | 189 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MARKTINNSK LEYNKVLNLD PQRKKRKKIL HHHYQNVDEE EEEEEENDFH IQNQEQVFHF 60 QQPHELFSHH FLYQDIENTP TQAQSKKRSY FPPPPPPLPP PHKQKLVTSS RFGGGEIVEV 120 QGGHIIRSIG RKDRHSKVCT AKGPRDRRVR LAAHTAIQFY DVQDRLGYDR PSKAVDWLIK 180 KAKAAIDELD ELPPWKPTTG EYDDDNNCKV VGSSSKRANS ASSSGENGNG NGSSLPPSLD 240 SDAISDTIKS FFPMGGGSTQ GNSTSMQFQS FQENNLFSRT SGQSQDLKLS LQSFQDPFNH 300 HIEQSQTQFQ ASSFYTGSIP LVGFDASSWP DHQEQQQPVE LGRLTAARAG GDTSMALGGG 360 ANSGASCYVL NSPFAPPLLQ ELFGQNQFLS QRGPLQSSYS PSIRAWIDPS AIAISTADPI 420 HQHQHHQAVL PMYSASVSGI GFASEVGGFS GFRIPTRIQG EIEEHDGISN KPSCASSDSR 480 H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-19 | 136 | 189 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-19 | 136 | 189 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 23 | 27 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006358953.1 | 0.0 | PREDICTED: transcription factor TCP4-like | ||||
Swissprot | Q8LPR5 | 8e-98 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | M1B8S2 | 0.0 | M1B8S2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400039786 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3207 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 4e-95 | TCP family protein |