PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00529.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 650aa    MW: 73978.5 Da    PI: 9.148
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00529.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.28.8e-09594637445
                              S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                              W++  ++ l++a k ++++   +W+++a  ++ g+t +qck ++ 
  Sme2.5_00529.1_g00002.1 594 WSAVQEKALIQALKTFPKEtsqRWERVATAVP-GKTMNQCKKKFA 637
                              ********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465653.4E-2187175IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1102.2E-2194197IPR001623DnaJ domain
SMARTSM002713.9E-1896171IPR001623DnaJ domain
CDDcd062571.28E-1397168IPR001623DnaJ domain
PROSITE profilePS5007618.97397179IPR001623DnaJ domain
PfamPF002269.9E-1897176IPR001623DnaJ domain
PRINTSPR006251.7E-8102120IPR001623DnaJ domain
PRINTSPR006251.7E-8120135IPR001623DnaJ domain
PRINTSPR006251.7E-8151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.602.3E-4455503IPR009057Homeodomain-like
PROSITE profilePS500906.098456511IPR017877Myb-like domain
SMARTSM007172.8E-4460513IPR001005SANT/Myb domain
SuperFamilySSF466891.12E-6462505IPR009057Homeodomain-like
CDDcd001673.69E-4463503No hitNo description
PROSITE profilePS512939.379589644IPR017884SANT domain
SMARTSM007171.8E-8590642IPR001005SANT/Myb domain
SuperFamilySSF466891.42E-9592647IPR009057Homeodomain-like
CDDcd001672.97E-6594640No hitNo description
PfamPF002492.2E-7594636IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-5594636IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MASRSSVRLI SYSEEIINGE PIYISSNCCP IKTHKYEPAG LAFHSVALRL IGHVEKEDPK  60
DGKEDVSNDK EQSFAYSSES YSSKGKKKSS TGEKVQDHYA LLGLSNLRYL ASEDQIRKSY  120
RDAALRHHPD KLASLLLAEE TEAAKQAKKE EIENRFKAIQ EAYEVLMDPV KRRIYDSTDE  180
FDDEIPTECA PQDFFKVFGP AFLRNGRWSV TQPIPSLGDE KTPIKEVDSF YNFWYSFKSW  240
REFPHADEFD LEQAESRDHK RWMERQNAKL SEKARKEESA RVRALVDNAY RKDPRILGRK  300
EAEKAEKQRK KEAKLLAKKL QEEEAVRIVE EEKRRKEEEE KKASEAASQQ KKLKEKEKKL  360
LRKERSRLRT LAAPVLSQHL LGLTDDDVEG LCMSLDIEQL RNLCDKADGK GELVIAELLR  420
EALGHEHNSK YENKGEKIKS QQNGSLESKK QVPSMSSEKK EKPWSKEEID LLRKGMLKYP  480
KGTSRRWEVI SDYIGTARTV EEILKATKTV LLQKPDSAKA FDSFLEKRKP APTIASPLST  540
RAEVEGVVNS SKPESESAKL ADSQVSPSQN TNSQNTEDAP AANGVSSSSD SDIWSAVQEK  600
ALIQALKTFP KETSQRWERV ATAVPGKTMN QCKKKFALLK ENFRNKKSAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A8e-2018629613123Zuotin
5dje_B8e-2018629613123Zuotin
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347682.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A0V0IPY40.0A0A0V0IPY4_SOLCH; Putative dnaJ subfamily C member 2-like
STRINGPGSC0003DMT4000085150.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95572225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-123DnaJ domain ;Myb-like DNA-binding domain