PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00482.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 561aa    MW: 63467.3 Da    PI: 4.8826
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00482.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.42.1e-12181202526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               C+++++tG Ck+G++CkF+H+
  Sme2.5_00482.1_g00001.1 181 DCPYYMKTGMCKFGSNCKFNHP 202
                              7********************8 PP
2zf-CCCH39.78e-13320343326
                              S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                              +++C++++rtG CkyG++C+F+H+
  Sme2.5_00482.1_g00001.1 320 EKECPYYMRTGSCKYGSNCRFHHP 343
                              679********************9 PP
3zf-CCCH28.62.4e-09455481127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              +++++C++f ++G Cky ++CkF+H++
  Sme2.5_00482.1_g00001.1 455 PGQPECSYFIKFGDCKYRSNCKFHHPK 481
                              5789*********************96 PP
4zf-CCCH37.34.6e-12503527327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              +  C+f++r+G+CkyG+ CkF H++
  Sme2.5_00482.1_g00001.1 503 QTVCSFYSRYGICKYGPACKFDHPE 527
                              678********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.723176204IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-6176203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6178203IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-9181202IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-5182201IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.835317345IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-6317344IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6320344IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-10320343IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5323342IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.788454482IPR000571Zinc finger, CCCH-type
SMARTSM003560.015454481IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-5458483IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6500527IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131500528IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-6501528IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9503527IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4505527IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MEATEEHQNQ NQNQSPDHTE ELRLGLESLN SETSSLPSDL NFQNPNQNQP KADENEDDDE  60
MAMQVICEEL KNLVLSQVLD EDGGNEGLHH DREEREELKK RSEDEIENVE GNDQGWGYEV  120
EYGYDHYDED GDESRSGSRN DNENDVENEN GYEGDSKEAG FNANRINKRK TSYPLRPDAQ  180
DCPYYMKTGM CKFGSNCKFN HPSRRKIQGT KEKGKQREDS QERQGQIECK EQYVGIRTLN  240
SSYNTRCKSL QSSFVGGEMV RNEDIWVKVD VTFCGRQNAG EFSDNFVFRF YMVTNFSGLK  300
NKGSNFLIGV CQSSAFDCGE KECPYYMRTG SCKYGSNCRF HHPDPTTVAG ADPSPGYNNA  360
GTVPVQAASH LAASSWSPPR ALNDTAPYVP PMVYPTQGIP SPNTEWNGYQ APVYPTSEKR  420
LPTPPAFAMN NPATKTNFYT RPQQPQLVEE YPERPGQPEC SYFIKFGDCK YRSNCKFHHP  480
KSRISKANAS TLNDKGLPLR PDQTVCSFYS RYGICKYGPA CKFDHPENYV GSASSTESGF  540
DQHQQSQMSL GWQGRQLEVD H
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351454.10.0PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X2
TrEMBLA0A0V0IH080.0A0A0V0IH08_SOLCH; Putative zinc finger CCCH domain-containing protein 43-like
STRINGPGSC0003DMT4000392290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.16e-95C3H family protein