PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00351.1_g00011.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

FAR1

Protein Properties

Length: 695aa MW: 80516.8 Da PI: 7.6407

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00351.1_g00011.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.4	4.2e-22	84	167	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 ++Yn YA+evGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w++ ++ leHn Sme2.5_00351.1_g00011.1 84 NYYNCYAREVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMIRMRMVDSKRWRILEVTLEHN 164 69***************************************9988.....99****************************** PP FAR1 87 Hel 89 H+l Sme2.5_00351.1_g00011.1 165 HSL 167 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-19	84	167	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.3E-26	286	379	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.866	573	609	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	584	611	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 695 aa Download sequence Send to blast
MEEASLDSEQ DVTGQGSGRF QEVESNGLDG QKSEQIESDE LHVQNVEQIE SDGLDDQNCV 60 TDGQKEFVAP AVGMEFESYD DAYNYYNCYA REVGFRVRVK NSWFKRNSRE KYGAVLCCSS 120 QGFKRIKDVN RLRKETRTGC PAMIRMRMVD SKRWRILEVT LEHNHSLGTK AFKCIKKTGA 180 GNKMKLDSNC NAEVRTVKLY RALVIDAGAN RNANFSARRC QTSSDCHDKL NLRKGDTQAM 240 YNYFCRMQLT NPNFFYLMDL NDEGQLRNVF WIDARSRAAS AYFVDVIYID NSYLSNKYEI 300 PLVTFVGTNH HGQLMLLGCG LLAGETKASY VWVFKAWLTC SIGRFPQTII TERCKVLETA 360 ISEVFPRSLH CFALSHIMRK VPEKLGGLRN YDVIRKALIK TIYEDLKPFD FEAAWRFMIQ 420 RFGVGDHEWL CSLYNDRAKW APVYLKDIFF AGMATARSNE TLTAFFDKYV HKQTPLKEFL 480 DKYELALQKK FKEEALADVE SRSSIPELKT KCSFELQLSK VYTREIFKRF QLEVEEMYSC 540 FSTTQLHVDG QVVIFLVKER VLEEGNRREI QEYEVLFNRA AAEVRCICSC FNFYGYLCRH 600 ALCVLNFNGV EEIPSKYILS RWKKDYKRLC ASDLESSSSE STEQVQWYSQ LYRSALQVVE 660 EGVISLDHYK VALNAFEESL SRVHHIEEKP NKKLM

Sequence ? help Back to Top

Protein Sequence Length: 695 aa Download sequence Send to blast

MEEASLDSEQ DVTGQGSGRF QEVESNGLDG QKSEQIESDE LHVQNVEQIE SDGLDDQNCV  60
TDGQKEFVAP AVGMEFESYD DAYNYYNCYA REVGFRVRVK NSWFKRNSRE KYGAVLCCSS  120
QGFKRIKDVN RLRKETRTGC PAMIRMRMVD SKRWRILEVT LEHNHSLGTK AFKCIKKTGA  180
GNKMKLDSNC NAEVRTVKLY RALVIDAGAN RNANFSARRC QTSSDCHDKL NLRKGDTQAM  240
YNYFCRMQLT NPNFFYLMDL NDEGQLRNVF WIDARSRAAS AYFVDVIYID NSYLSNKYEI  300
PLVTFVGTNH HGQLMLLGCG LLAGETKASY VWVFKAWLTC SIGRFPQTII TERCKVLETA  360
ISEVFPRSLH CFALSHIMRK VPEKLGGLRN YDVIRKALIK TIYEDLKPFD FEAAWRFMIQ  420
RFGVGDHEWL CSLYNDRAKW APVYLKDIFF AGMATARSNE TLTAFFDKYV HKQTPLKEFL  480
DKYELALQKK FKEEALADVE SRSSIPELKT KCSFELQLSK VYTREIFKRF QLEVEEMYSC  540
FSTTQLHVDG QVVIFLVKER VLEEGNRREI QEYEVLFNRA AAEVRCICSC FNFYGYLCRH  600
ALCVLNFNGV EEIPSKYILS RWKKDYKRLC ASDLESSSSE STEQVQWYSQ LYRSALQVVE  660
EGVISLDHYK VALNAFEESL SRVHHIEEKP NKKLM

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006341403.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
Refseq	XP_006341404.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X2
Refseq	XP_006341405.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X2
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2G2WQF9	0.0	A0A2G2WQF9_CAPBA; Protein FAR1-RELATED SEQUENCE 6
STRING	XP_009620425.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]