PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00298.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 411aa    MW: 44780 Da    PI: 7.4683
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00298.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1332.8e-41942612126
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                              ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s
  Sme2.5_00298.1_g00001.1  94 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMS 179
                              789******************************************************************99987777777777555 PP

                      TCP  87 sg..........................................kaaksaakskksqksaasalnlakesrakarararert 126
                               +                                          ++ +s ++ + +q+ + + l+l + s +++ +r+r ++
  Sme2.5_00298.1_g00001.1 180 VPsqlrssyfnpnfslsqrrslfqgiglssdrsattllnfqsgnSNPNSLHQFQAKQEMPDNSLELTETSIEESLSRKRRQE 261
                              5566667788888888888889999998877777777777665333333334455555555556666666666666644433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.4E-4598271IPR005333Transcription factor, TCP
PROSITE profilePS5136927.923100154IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010029Biological Processregulation of seed germination
GO:0010229Biological Processinflorescence development
GO:0031347Biological Processregulation of defense response
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MEGRGGGDDH LHHHHHNHHH HHQHHQQQYR PNNFPFQLLE KKEDEPCSSS SAANTPNNYP  60
SLSISPSDIN TNINPNSNDL QITVASTEPT KKPPPKRTST KDRHTKVDGR GRRIRMPALC  120
AARVFQLTRE LGHKSDGETI EWLLQQAEPA VIAATGTGTI PANFTSLNIS LRSSGSSMSV  180
PSQLRSSYFN PNFSLSQRRS LFQGIGLSSD RSATTLLNFQ SGNSNPNSLH QFQAKQEMPD  240
NSLELTETSI EESLSRKRRQ ELDLQQQQNE QQVGSYLLQS SSSGTMPTSH SSIPANFWML  300
TNNNTQVLGG DPVWTFPSVN NSAAALYRST MSSGLHFMNF PTPVALLPTQ QFGGGGGGSN  360
TLGGEGQLGM VTGLNPYRPC SGVSESQASG SHSHHGGGGD DRHDSTSHHN S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254259SRKRRQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00396DAPTransfer from AT3G47620Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0133050.0BT013305.1 Lycopersicon esculentum clone 134950R, mRNA sequence.
GenBankGQ4963350.0GQ496335.1 Solanum lycopersicum TCP transcription factor 17 (TCP17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354786.10.0PREDICTED: transcription factor TCP14-like
SwissprotQ93Z004e-65TCP14_ARATH; Transcription factor TCP14
TrEMBLM1D6K80.0M1D6K8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000831480.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28822351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.13e-51TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]