PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00269.1_g00011.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 428aa    MW: 47582.5 Da    PI: 6.3494
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00269.1_g00011.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.71.6e-073774102154
                              HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              k +yp+++++++L +++gL+ +q+ +WF N+R +
  Sme2.5_00269.1_g00011.1 377 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 410
                              469*****************************87 PP
2ELK28.82.8e-10331352122
                      ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                              ELKh+L+++Y+++++++++E++
  Sme2.5_00269.1_g00011.1 331 ELKHELKQGYKEKIVDIREEIL 352
                              9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.1E-19145189IPR005540KNOX1
PfamPF037903.9E-17147188IPR005540KNOX1
SMARTSM012561.2E-21198274IPR005541KNOX2
PfamPF037918.0E-11235273IPR005541KNOX2
SMARTSM011886.1E-4331352IPR005539ELK domain
PfamPF037891.0E-6331352IPR005539ELK domain
PROSITE profilePS512139.969331351IPR005539ELK domain
PROSITE profilePS5007111.531351414IPR001356Homeobox domain
SuperFamilySSF466895.56E-16353417IPR009057Homeodomain-like
SMARTSM003892.6E-11353418IPR001356Homeobox domain
CDDcd000862.41E-11354415No hitNo description
Gene3DG3DSA:1.10.10.603.3E-25358415IPR009057Homeodomain-like
PfamPF059203.1E-17371410IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MALHQQQQQQ QQQNAAVLRS MLPESPHHDA RKSPPTWLNT SLLRQQQQQQ HFATASSPTS  60
AVAGGNNFLH LQTSNSDSSN SNQWLSPTAG AGGTGGVGGG HNDELSESMN FSKKMSGGGG  120
GGGEDNNNHN NSNNNNDEEN SWEREKCKAD ILNHPLYDQL LSAHVSCLRI ATPVDQLPRI  180
DAQLAQSQNV VAKYSVLGQG QPPLDDKDLD QFMFLESRVL LETISLPGQD KGKTHYVLLL  240
SSFKEQLQQH VRVHAMEAVM ACWELEQSLQ SLTGVAPGEG TGATMSDDDD DQADSDTNFL  300
DGGFDGPDSM GFGPLVPTES ERSLMERVRQ ELKHELKQGY KEKIVDIREE ILRKRRAGKL  360
PGDTTSVLKA WWQSHSKWPY PTEDDKARLV QETGLQLKQI NNWFINQRKR NWHSNPSSSS  420
SQKSKRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A3e-13354418872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1407427RKRNWHSNPSSSSSQKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2612470.0GQ261247.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI041 mRNA, complete cds.
GenBankKJ4776890.0KJ477689.1 Solanum tuberosum class II knox protein (HOX1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001233945.20.0homeobox protein knotted-1-like LET12
SwissprotO223000.0LET12_SOLLC; Homeobox protein knotted-1-like LET12
TrEMBLM1D1270.0M1D127_SOLTU; Uncharacterized protein
STRINGSolyc07g007120.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-148KNOTTED1-like homeobox gene 3