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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00195.1_g00017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | TCP | ||||||||
Protein Properties | Length: 244aa MW: 27896.5 Da PI: 9.607 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 131.7 | 6.9e-41 | 68 | 188 | 2 | 132 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87 a+kkdrhski T++g RdRRvRls+e+a++fFdLqd+LGfdk+skt++WL++++k ai e ++++s+++s + +++ Sme2.5_00195.1_g00017.1 68 AVKKDRHSKILTSQGHRDRRVRLSIEVARKFFDLQDMLGFDKPSKTLDWLFTKSKLAIEEVMSDESKKSSGT-----------PNN 142 89**************************************************************66666333...........444 PP TCP 88 gkaaksaa.kskksqksaasalnlakesrakarararertrekmri 132 ++++ ++ + ++ ++ +++ + kesrakar+rarert +k + Sme2.5_00195.1_g00017.1 143 NSECDEDIiVPAPAVDELTKKTKQEKESRAKARERARERTIKKIWT 188 56667777677777888887788899**************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.6E-35 | 69 | 139 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.877 | 70 | 128 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.889 | 168 | 185 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MFPFGNSNNG NPMLHSSPFL SNQILLHQQD LPITHHHYLG APNGNLIEND YLFSTNNVVI 60 DNKKIKKAVK KDRHSKILTS QGHRDRRVRL SIEVARKFFD LQDMLGFDKP SKTLDWLFTK 120 SKLAIEEVMS DESKKSSGTP NNNSECDEDI IVPAPAVDEL TKKTKQEKES RAKARERARE 180 RTIKKIWTQI APNREAQPSH YNNHIRNWNH HDEVTPTIMA APTSCCTSSP QVQKAWDSYL 240 GSQI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006338278.1 | 1e-115 | PREDICTED: transcription factor DICHOTOMA-like | ||||
TrEMBL | M1AMI9 | 1e-114 | M1AMI9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400026037 | 1e-114 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4333 | 22 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 1e-24 | TCP domain protein 12 |