PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00195.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 321aa    MW: 35150.2 Da    PI: 6.6784
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00195.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.18e-101111481954
                              HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Sme2.5_00195.1_g00007.1 111 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 148
                              665559******************************88 PP
2BELL673.6e-221433072
                     BELL 30 lqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                             +q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdaia q+
  Sme2.5_00195.1_g00007.1  1 MQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAIAAQL 43
                             9***************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075261.2E-17140IPR006563POX domain
PROSITE profilePS5007112.56889152IPR001356Homeobox domain
SMARTSM003892.0E-992156IPR001356Homeobox domain
CDDcd000861.05E-1292153No hitNo description
SuperFamilySSF466891.5E-1793159IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-2995158IPR009057Homeodomain-like
PfamPF059201.3E-18109148IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MQMVVNSFDL VMGFGAAVPY TALAQKAMSR HFRCLKDAIA AQLKQSCEML GEKDAGTSGL  60
TKGETPRLKM LEQSLRQQRA FHQMGMMEQE AWRPQRGLPE RSVNILRAWL FEHFLHPYPS  120
DADKHLLARQ TGLSRNQVSN WFINARVRLW KPMVEDMYQQ EAKEGEGEGD GDGDDKSQSQ  180
NSGNNNIIAQ TPTPNSMMSN SSSTNMTTTT TATTTAVAAA ETATAATPIT VTSSKRSQIN  240
ATDSDPSIVA INSFSENQAN FPTNIHDPDT CRRGNFSGDG TATHDHMGST MIRFGTTSGD  300
VSLTLGLRHA GNLPENTHFF G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-1798155562Homeobox protein Meis2
3k2a_B6e-1798155562Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4066990.0AF406699.1 Solanum tuberosum BEL1-related homeotic protein 13 (Bel13) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338267.10.0PREDICTED: BEL1-like homeodomain protein 2
RefseqXP_006338268.10.0PREDICTED: BEL1-like homeodomain protein 2
SwissprotQ9SW801e-117BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLM1AMS50.0M1AMS5_SOLTU; Uncharacterized protein
TrEMBLM1AMS70.0M1AMS7_SOLTU; Uncharacterized protein
TrEMBLQ8LLE20.0Q8LLE2_SOLTU; BEL1-related homeotic protein 13 (Fragment)
STRINGPGSC0003DMT4000261720.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33412139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-106BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]