PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00193.1_g00016.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 348aa    MW: 39255.2 Da    PI: 7.5
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00193.1_g00016.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP95.31.2e-2954172289
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaessss 80 
                               g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl++ k+ i+ l+ +  +++ ++       e+ s++ 
  Sme2.5_00193.1_g00016.1  54 FGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLEATKHDIDNLPPLAVPPEYFTrfqqsprEEYSDVH 139
                              689*************************************************************7777744433221111111111 PP

                      TCP  81 sasnsssg............................k 89 
                                +    +                            +
  Sme2.5_00193.1_g00016.1 140 DLQ----QlrsqwinanqpyfgvddslrgkskvsidH 172
                              111....122234444444555554444443333331 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-2756163IPR005333Transcription factor, TCP
PROSITE profilePS5136928.86756114IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MNSSENSSQT KQESGGRGTN NGSRLTSKTT STPSSSRQWG AFKNPRIVRV SRAFGGKDRH  60
SKVCTIRGLR DRRIRLSVPT AIQLYDLQDR LGLSQPSKVV DWLLEATKHD IDNLPPLAVP  120
PEYFTRFQQS PREEYSDVHD LQQLRSQWIN ANQPYFGVDD SLRGKSKVSI DHAESWKNKS  180
IASNQEPNRE DNMFPLGNIR SPNLLGMPFS SYHQWEPNSN LSLGHFGHNA FSSQIDESSH  240
RNGNFPLSLG SSSSPFPSSS QLHYNPVATT FQPIVPSPYM TNYPIESHHD PRAHMNHFNF  300
LTSTTSPNNP LVMPTLNLIS SSQPRWINSR DDDDDYDDDG QLFEGRAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1761115155Putative transcription factor PCF6
5zkt_B3e-1761115155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBMTransfer from 496250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2384469e-90AC238446.1 Solanum lycopersicum chromosome 3 clone C03HBa0051C24, complete sequence.
GenBankAC2384699e-90AC238469.1 Solanum lycopersicum chromosome 3 clone C03HBa0291G05, complete sequence.
GenBankEU1247399e-90EU124739.1 Solanum lycopersicum chromosome 3 clone C03HBa0233O20, complete sequence.
GenBankHG9755159e-90HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234564.21e-135TCP transcription factor 4
TrEMBLG3BGU41e-132G3BGU4_SOLLC; TCP transcription factor 4
STRINGSolyc03g115010.1.11e-134(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.13e-45TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5