PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00190.1_g00010.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 354aa    MW: 40693.8 Da    PI: 9.6139
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00190.1_g00010.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1241.7e-381492562133
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssasnss 86 
                              +gkkdrhski+T++g RdRR+Rls+++a++fFdLqd+LGfdk+s+tieWL+ ++k aikel ++  +++ +++             
  Sme2.5_00190.1_g00010.1 149 TGKKDRHSKICTAQGVRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLFSKSKNAIKELSRN--IPKeNNS------------- 219
                              79**************************************************************..4440222............. PP

                      TCP  87 sgkaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                                        s +++++++ +l +  +s +  ra+ar++t+ekm+ik
  Sme2.5_00190.1_g00010.1 220 ----------SDNQNNDDHRKLRKIGSSDKPIRAKARNKTKEKMMIK 256
                              ..........1223334443455555666777777777777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-37149265IPR005333Transcription factor, TCP
PROSITE profilePS5136936.873151209IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MFPKSNILHD PFFYTSQELL KQSYNTYVHH HQNPNSTSTI VVEEEKDDPF FLNFPSPFLD  60
DHELPLSQIF SQKYHQKLEV SDNHECNNQA DLGNIVKDNY NVDNSRSTRL NVKIMGDQSL  120
NHAIKSPEMD TSSPSSKKRK LSTKPRRRTG KKDRHSKICT AQGVRDRRMR LSLQIARKFF  180
DLQDMLGFDK ASNTIEWLFS KSKNAIKELS RNIPKENNSS DNQNNDDHRK LRKIGSSDKP  240
IRAKARNKTK EKMMIKLDHM DKKGNRKLDE TNPIGIDKLG SNSRSLEHQF ANVGIIERYL  300
GGASYSSITS IFDYDNNGVI KGDRDISDNC YNMGILENCL MTNEVQMPFA GVKD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137147KRKLSTKPRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075184.10.0transcription factor TCP12-like
TrEMBLA0A3Q7GFQ10.0A0A3Q7GFQ1_SOLLC; Uncharacterized protein
STRINGSolyc05g009900.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.15e-32TCP domain protein 12