PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00170.1_g00020.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 401aa    MW: 42588.7 Da    PI: 7.9167
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00170.1_g00020.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP80.64e-25912452116
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                              ++k+++++++hTkv+gR+RR+R++a+caar           +d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s
  Sme2.5_00170.1_g00020.1  91 PAKRTSTKDRHTKVDGRGRRIRMPALCAAR-----------SDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMS 165
                              689***************************...........****************************99987777777777555 PP

                      TCP  87 sg..................................................kaaksaa.kskksqksaasalnlakesra 116
                               +                                                    +++   +s + ++saa+  nl+++ r+
  Sme2.5_00170.1_g00020.1 166 VPsqlrssyfnpnfslsqrrglfpgiglstdtsastllnfqsanlspnmqlqT-KPELRdNSIDLTQSAAAEENLSRKRRS 245
                              55666667788888888888899999888777777777664443333333321.111111222222222222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.3E-2895256IPR005333Transcription factor, TCP
PROSITE profilePS5136910.9297140IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDGGGDDHLH QHHQHHHQHR PITTFPFQLL GKKEDEACSS SSNAAAAYTT SLAISNTDNT  60
HTNPSNTPRS TTSASSLQIS ASGTDTSKKP PAKRTSTKDR HTKVDGRGRR IRMPALCAAR  120
SDGETIEWLL QQAEPAVIAA TGTGTIPANF TSLNISLRSS GSSMSVPSQL RSSYFNPNFS  180
LSQRRGLFPG IGLSTDTSAS TLLNFQSANL SPNMQLQTKP ELRDNSIDLT QSAAAEENLS  240
RKRRSDLDLE QQQQQQQQMG NYLLQSSTGT MPTSHSSIPA NFWMVTNPIP SNQVMGGDPI  300
WPFPSVSNSG AAAALYRGTM PSGLQFMNFP TPVALLPSQQ LGSSSGGGSG NNGLGEGQLG  360
MFAGLNPYRG VGGVSESQAS GSHSHHGGGT DDRHDTASHH S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239244SRKRRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562806.10.0PREDICTED: transcription factor TCP14
SwissprotQ93Z004e-52TCP14_ARATH; Transcription factor TCP14
TrEMBLA0A2G3B7740.0A0A2G3B774_CAPCH; Transcription factor TCP23
STRINGXP_009612852.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28822351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.11e-45TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]