PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00162.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 529aa    MW: 57767.5 Da    PI: 6.745
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00162.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.29e-18142228186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                              +W++  + +L+ea+ e+  +l+rg+l++ +Weev++ +  r ++ ++s +qCk+k +nl+kryk ++++++ +   + s++p+f+q
  Sme2.5_00162.1_g00003.1 142 EWSDTAIACLLEAYMEKFVQLNRGNLRGRDWEEVAAMVseRCEKQSKSVEQCKNKVDNLKKRYKLERHRMSTG-GITISHWPWFKQ 226
                              5*************************************767778899************************99.66777******* PP

                 trihelix  85 le 86 
                              +e
  Sme2.5_00162.1_g00003.1 227 ME 228
                              *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-20140230No hitNo description
Gene3DG3DSA:3.40.1160.101.1E-65278516IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B31.966282522IPR015963Uridylate kinase, bacteria
SuperFamilySSF536333.27E-52283516IPR001048Aspartate/glutamate/uridylate kinase
PRINTSPR004741.2E-5284298IPR001057Glutamate/acetylglutamate kinase
CDDcd042542.37E-110285516No hitNo description
PfamPF006962.9E-25286501IPR001048Aspartate/glutamate/uridylate kinase
PRINTSPR004741.2E-5428455IPR001057Glutamate/acetylglutamate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0006561Biological Processproline biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MASCDDDFSL LGDDNAAAAP TTANPTYHHQ PFSTHRFKPV QIHPPPIPAG SPKNISGDDD  60
EGEGYSDNNT QSYHIGVNHY DNDSNPFEND TDVDRSRVNS SNDKRTDRED ISDNGTPYNY  120
KRSKIGSSSG GGSGEYRKDR EEWSDTAIAC LLEAYMEKFV QLNRGNLRGR DWEEVAAMVS  180
ERCEKQSKSV EQCKNKVDNL KKRYKLERHR MSTGGITISH WPWFKQMEQI VGNSVSVKAT  240
SEEDKAIVAV INSSTGRQSK RYGTAVPSPS GQIVKSKSSV GPRWRRVVLK ISGAALAGTT  300
PNTNDPNNID PKVATLVATE VSIACRLGIE VAIVVGGRNF FCGDTWVTST GLDRCTAYQI  360
GMMATVMNSI LLQSALEKVG VQTRVQSAFS MPEHTEPYSR QRAMRHLEKG RVVIFGGIGA  420
GTGNPLFSTD TAAALRASEI HADALLKATN VDGVYACDSR NNNVVAEHVS FRELVSGGDS  480
PLDLMAVTLC EENAIPIVIF NLHGPGNISR ALCGEQTDKE IHRAALRLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A1e-542845169234Uridylate kinase
3ek5_B1e-542845169234Uridylate kinase
3ek5_C1e-542845169234Uridylate kinase
3ek5_D1e-542845169234Uridylate kinase
3ek5_E1e-542845169234Uridylate kinase
3ek5_F1e-542845169234Uridylate kinase
3ek6_A1e-542845169234Uridylate kinase
3ek6_B1e-542845169234Uridylate kinase
3ek6_C1e-542845169234Uridylate kinase
3ek6_D1e-542845169234Uridylate kinase
3ek6_E1e-542845169234Uridylate kinase
3ek6_F1e-542845169234Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341185.10.0PREDICTED: uncharacterized protein LOC102600206
TrEMBLA0A0V0IJX70.0A0A0V0IJX7_SOLCH; Putative aspartate/glutamate/uridylate kinase family protein-like
STRINGPGSC0003DMT4000070590.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87282427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein