PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00151.1_g00018.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 304aa    MW: 34525.6 Da    PI: 4.6616
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00151.1_g00018.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.93.5e-082502832255
                              SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                 Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                               +yp++ ++  LA+++gL+ +q+ +WF N+R ++
  Sme2.5_00151.1_g00018.1 250 WPYPTEGDKVCLAESTGLDPKQINNWFINQRKRH 283
                              58*****************************885 PP
2ELK31.15.2e-11203224122
                      ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                              E+Kh L+ KYsgy++sLkq F+
  Sme2.5_00151.1_g00018.1 203 EIKHKLMGKYSGYISSLKQDFC 224
                              89*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.9E-1560104IPR005540KNOX1
PfamPF037907.0E-1962103IPR005540KNOX1
SMARTSM012564.0E-13115166IPR005541KNOX2
PfamPF037912.2E-18119165IPR005541KNOX2
PfamPF037891.1E-8203224IPR005539ELK domain
PROSITE profilePS512139.69203223IPR005539ELK domain
SMARTSM011881.4E-5203224IPR005539ELK domain
PROSITE profilePS5007111.24223286IPR001356Homeobox domain
SMARTSM003897.1E-10225290IPR001356Homeobox domain
SuperFamilySSF466892.65E-18225295IPR009057Homeodomain-like
CDDcd000862.34E-11226287No hitNo description
Gene3DG3DSA:1.10.10.601.5E-26229287IPR009057Homeodomain-like
PfamPF059201.5E-16243282IPR008422Homeobox KN domain
PROSITE patternPS000270261284IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEEIKYESDD HNLDTSDYLE WPAPAAFCDE AVPVEFNGSP AGNIMLLSAA NNSLVEENQS  60
NIRAKISSHP FYPKLLLTCI DCHKVGAPPE IVNMLDNIVQ ENDLHQRSSS SSTTLNRPIS  120
DDSELDDFMV SYCDVLAKFK LDLEMSFNET TSFLDDIQTQ LTNLCTTTNI SGAEGDTVGG  180
DGEVHNEQEK SIINYKICRS MSEIKHKLMG KYSGYISSLK QDFCKKNNKG KLPREATQIL  240
LNWWTTHYNW PYPTEGDKVC LAESTGLDPK QINNWFINQR KRHWKPSENM QFAVMETIYG  300
HFSQ
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0257132e-96AB025713.1 Nicotiana tabacum mRNA for homeobox 9, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068272.11e-127homeobox protein knotted-1-like 2
SwissprotQ84JS67e-78KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A2G3CYC81e-129A0A2G3CYC8_CAPCH; Uncharacterized protein
STRINGXP_009618137.11e-119(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.16e-72KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]