PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00039.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 365aa    MW: 41520.2 Da    PI: 5.9671
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00039.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.3e-092923262155
                              HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                 Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                              k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Sme2.5_00039.1_g00006.1 292 KWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 326
                              669*****************************885 PP
2ELK37.93.8e-13246267122
                      ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                              ELK++LlrKYsgyL+sLkqE+s
  Sme2.5_00039.1_g00006.1 246 ELKNHLLRKYSGYLSSLKQELS 267
                              9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.8E-21102146IPR005540KNOX1
PfamPF037903.2E-22103145IPR005540KNOX1
SMARTSM012566.2E-26153204IPR005541KNOX2
PfamPF037911.1E-23157202IPR005541KNOX2
PfamPF037892.5E-10246267IPR005539ELK domain
SMARTSM011883.5E-7246267IPR005539ELK domain
PROSITE profilePS5121311.296246266IPR005539ELK domain
PROSITE profilePS5007112.86266329IPR001356Homeobox domain
SuperFamilySSF466891.58E-19267341IPR009057Homeodomain-like
SMARTSM003895.6E-13268333IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.0E-27271332IPR009057Homeodomain-like
CDDcd000865.14E-12278330No hitNo description
PfamPF059201.0E-16286325IPR008422Homeobox KN domain
PROSITE patternPS000270304327IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MENNYNNNEV GENSGGQRGY FIYGGSQVPV GGWGVGGRSS GGGGDCYDPM IVKTEGGSTS  60
QHHHDHTFHY PYIIRHHHQT VQNHHQESTE TSPSAPTGEV LEALKAKIIA HPQCSNLLDA  120
YMDCQKVGAP PEVAARLSAV RQEFEARQRA SLTDRDVSKD PELDQFMEAY YDMLVKYREE  180
LTRPLQEAME FMQKIEAQLN MLGNAPDRIF NSEDKCEGVG SSEEDQENSG GETELAEIDP  240
RAEDRELKNH LLRKYSGYLS SLKQELSKKK KKGKLPKDAR QKLINWWELH YKWPYPSESE  300
KVALAESTGL DQKQINNWFI NQRKRHWKPS EDMQFMVMDG LHPQNAAALY MDGHYMGESP  360
FRLGQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13543GGRSSGGGG
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP3351250.0KP335125.1 Solanum tuberosum knox variant X1 (POTH20) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356812.10.0PREDICTED: homeotic protein knotted-1 isoform X1
SwissprotQ413300.0KN1_SOLLC; Homeotic protein knotted-1
TrEMBLM1A1M90.0M1A1M9_SOLTU; Knox variant X1
STRINGPGSC0003DMT4000127120.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49732333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-133KNOTTED-like from Arabidopsis thaliana