PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00037.1_g00027.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 295aa    MW: 33229.2 Da    PI: 8.6377
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00037.1_g00027.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP98.99.4e-3159149266
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................... 65 
                               g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +ak++i+el+ +                      
  Sme2.5_00037.1_g00027.1  59 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDAAKHEIDELPPLqippgnlnpnlypmfgiggnsh 144
                              689*************************************************************5554444444444443333222 PP

                      TCP  66 ....s 66 
                                  +
  Sme2.5_00037.1_g00027.1 145 qvinK 149
                              22221 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-2761123IPR005333Transcription factor, TCP
PROSITE profilePS5136931.55461119IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEKNNLSSGI SQIKGSKNCS CVASIWRKRQ AQQSLIRVLE ATSWTRLKDP RIVRVSRAFG  60
GKDRHSKVCT VRGLRDRRVR LSVPTAIQLY DLQDRLGLNQ PSKVVDWLLD AAKHEIDELP  120
PLQIPPGNLN PNLYPMFGIG GNSHQVINKE GPNNVPLELP NNNNNNNALV YNSNFMKWDP  180
SNLSLAHSEN SLSHQDIHNF NLMSSMPLGS HHQVVYYPPG LPQFFHQHNV VGESSSSEFD  240
PKEINFQMLN NSGSENPMSS STNSFRHSID STSQSIIRPF HFLPSQNCDE REPSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1966120155Putative transcription factor PCF6
5zkt_B3e-1966120155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-121HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338357.11e-158PREDICTED: transcription factor TCP17
TrEMBLM0ZLP71e-157M0ZLP7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000034531e-157(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.16e-48plastid transcription factor 1