PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00034.1_g00004.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

TCP

Protein Properties

Length: 380aa MW: 40482.6 Da PI: 7.6555

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00034.1_g00004.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.2	8.6e-40	84	200	4	89
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++ ++s +ss+ + s++ Sme2.5_00034.1_g00004.1 84 VKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTGTIPANFStLNVSTRSSGTTISAP 169 5899***************************************************************9997666666666633333 PP TCP 89 ..............................k 89 Sme2.5_00034.1_g00004.1 170 psksaplfihgggstamlgfhhhlststgfG 200 3334444444444444444443333333330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.0E-38	88	218	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.946	88	142	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MEFMETHRNK QAAGTTTTDH PQQQHNQGTP SSLQLISPHQ SQPDPSTPGS NHPHGPFMGS 60 ISMQSALVSP PSNNNNALSS SKVVKKPSKD RHTKVDGRGR RIRMPALCAA RVFQLTRELG 120 HKSDGETIEW LLQQAEPAII ATTGTGTIPA NFSTLNVSTR SSGTTISAPP SKSAPLFIHG 180 GGSTAMLGFH HHLSTSTGFG QDPEENYMKK RFREDTSSAT SPSADKPTEP GSDSKPGSSQ 240 PPPSLVPAQA MWAVAPAGGN VGNAFWMLPV SGSTTASVGV AQPDHQLWQY KGSRIGGLEF 300 PGGGRFSPVQ LGSMVLQQSQ PVQQLGSNMG MLSSMNAYNN TNNNNRVVDL GMNLEHHHGH 360 HQSQPQDSDS GDENHNDSQS

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MEFMETHRNK QAAGTTTTDH PQQQHNQGTP SSLQLISPHQ SQPDPSTPGS NHPHGPFMGS  60
ISMQSALVSP PSNNNNALSS SKVVKKPSKD RHTKVDGRGR RIRMPALCAA RVFQLTRELG  120
HKSDGETIEW LLQQAEPAII ATTGTGTIPA NFSTLNVSTR SSGTTISAPP SKSAPLFIHG  180
GGSTAMLGFH HHLSTSTGFG QDPEENYMKK RFREDTSSAT SPSADKPTEP GSDSKPGSSQ  240
PPPSLVPAQA MWAVAPAGGN VGNAFWMLPV SGSTTASVGV AQPDHQLWQY KGSRIGGLEF  300
PGGGRFSPVQ LGSMVLQQSQ PVQQLGSNMG MLSSMNAYNN TNNNNRVVDL GMNLEHHHGH  360
HQSQPQDSDS GDENHNDSQS

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	1e-126	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006350337.1	0.0	PREDICTED: transcription factor TCP23-like
Swissprot	Q9C518	4e-67	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A0V0I6U9	0.0	A0A0V0I6U9_SOLCH; Putative transcription factor TCP8-like
STRING	PGSC0003DMT400023981	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	3e-48	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]