PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00013.1_g00013.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Nin-like

Protein Properties

Length: 1015aa MW: 110360 Da PI: 6.3563

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00013.1_g00013.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.7	4e-27	598	659	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLg..........vclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yFs+++kdAAk+Lg vc+T++KriCRq+GI+RWP+Rki+++ Sme2.5_00013.1_g00013.1 598 AEKTISLEVLQQYFSGSLKDAAKSLGailinvlattVCPTTMKRICRQHGISRWPSRKINKV 659 589*********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.835	586	679	IPR003035	RWP-RK domain
Pfam	PF02042	1.6E-24	601	659	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.03E-21	919	1006	No hit	No description
SMART	SM00666	1.6E-24	920	1002	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.2E-24	920	1001	No hit	No description
PROSITE profile	PS51745	23.282	920	1002	IPR000270	PB1 domain
Pfam	PF00564	7.9E-18	921	1001	IPR000270	PB1 domain
CDD	cd06407	1.02E-32	921	1001	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1015 aa Download sequence Send to blast
MSEPEGEMTQ KPQQRPCTAA ATERESMMMD LDLDIDSSWS VEQILAAAAA VSSNPGSPFL 60 PCSPLWAFSD DNDEKQAGNG ISGAVRISGH PRFVAYTGDL EAITETETGN ADKGRLPPPI 120 SGLIHGDYPE GSCIIKERMT QALRYLKEST VERVLAQVWA PVKEAGRSVL TTSGQPFVLD 180 PECNGLHQYR TVSLMYMFAV DGETGGVLGL PGRVFCLKLP EWTPNVQYYS RREFPRLNHA 240 LHYNVQGTLA LPVFEPSGRS CVGVLELIMT SQKINYAAEV DKVCRALEAV NLKSSGILDH 300 PNTQVYVMGY MNQICNEGRH NALVDILEIL TAVCETYKLP LAQTWVPCRH RSVLADGGGL 360 KKSCSSFDGS CMGQVCMSTT DVAFYVVDAH MWGFRDACAE HHLQKGQGVA GRAYASRKSC 420 YCEDITQFCK TEYPLVHYAR LFGLTSCFAI CLRSSHTAND DYILEFFLPP NSGDYSNQQP 480 LLNSLLLTMK QHFRSLSIAS GGELEHDWSS VEIIKASMEE KFDSKPESVP IPKSFPQPTC 540 LPNGWMHLDP VGEQQSAVGS DVSKSARSTS GTGEAPNHVS NSDNKASGKK SERKRGKAEK 600 TISLEVLQQY FSGSLKDAAK SLGAILINVL ATTVCPTTMK RICRQHGISR WPSRKINKVN 660 RSLSKLKCVI ESVQGAEGAF TLTSLAPNSL PAAVSSISWP AGANGSNLPS SPSSKPSVFP 720 EENNEFSNHG TPEFHIEAEP SNQMLGGRVT RNEKFPPPQN GFLHAEGSHK SRTGSVSREE 780 SAGTPTSHGS CQGSPCAGNE FSPQNGLVNS PARESCMKVG GSLEAACQTT KEVNLSSAFL 840 KPRPVVPKHT QKPFGGMLVE DAGSSHDLKN LCSPGDALVD ERAQDYSLMN PPFTDATAKD 900 PICVPPDTMQ QYSAWPEVTS VTIKATFKED IIRFRLCLNS GVVKLKEEVA KRLKLELGTF 960 DIKYLDDDHE LVSISCDADL QECVDISRSS GSSIVRLLIH DIISNLGSSC ESSGK

Sequence ? help Back to Top

Protein Sequence Length: 1015 aa Download sequence Send to blast

MSEPEGEMTQ KPQQRPCTAA ATERESMMMD LDLDIDSSWS VEQILAAAAA VSSNPGSPFL  60
PCSPLWAFSD DNDEKQAGNG ISGAVRISGH PRFVAYTGDL EAITETETGN ADKGRLPPPI  120
SGLIHGDYPE GSCIIKERMT QALRYLKEST VERVLAQVWA PVKEAGRSVL TTSGQPFVLD  180
PECNGLHQYR TVSLMYMFAV DGETGGVLGL PGRVFCLKLP EWTPNVQYYS RREFPRLNHA  240
LHYNVQGTLA LPVFEPSGRS CVGVLELIMT SQKINYAAEV DKVCRALEAV NLKSSGILDH  300
PNTQVYVMGY MNQICNEGRH NALVDILEIL TAVCETYKLP LAQTWVPCRH RSVLADGGGL  360
KKSCSSFDGS CMGQVCMSTT DVAFYVVDAH MWGFRDACAE HHLQKGQGVA GRAYASRKSC  420
YCEDITQFCK TEYPLVHYAR LFGLTSCFAI CLRSSHTAND DYILEFFLPP NSGDYSNQQP  480
LLNSLLLTMK QHFRSLSIAS GGELEHDWSS VEIIKASMEE KFDSKPESVP IPKSFPQPTC  540
LPNGWMHLDP VGEQQSAVGS DVSKSARSTS GTGEAPNHVS NSDNKASGKK SERKRGKAEK  600
TISLEVLQQY FSGSLKDAAK SLGAILINVL ATTVCPTTMK RICRQHGISR WPSRKINKVN  660
RSLSKLKCVI ESVQGAEGAF TLTSLAPNSL PAAVSSISWP AGANGSNLPS SPSSKPSVFP  720
EENNEFSNHG TPEFHIEAEP SNQMLGGRVT RNEKFPPPQN GFLHAEGSHK SRTGSVSREE  780
SAGTPTSHGS CQGSPCAGNE FSPQNGLVNS PARESCMKVG GSLEAACQTT KEVNLSSAFL  840
KPRPVVPKHT QKPFGGMLVE DAGSSHDLKN LCSPGDALVD ERAQDYSLMN PPFTDATAKD  900
PICVPPDTMQ QYSAWPEVTS VTIKATFKED IIRFRLCLNS GVVKLKEEVA KRLKLELGTF  960
DIKYLDDDHE LVSISCDADL QECVDISRSS GSSIVRLLIH DIISNLGSSC ESSGK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975520	0.0	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006352238.1	0.0	PREDICTED: protein NLP7-like isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	M1A4Z4	0.0	M1A4Z4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400014837	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]