PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00009.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 219aa    MW: 24510.8 Da    PI: 9.6116
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00009.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.7e-182979256
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                              y+GVr+++ +g+WvAeIr p +   r r++lg++ +ae Aa a+++a+ kl+ge
  Sme2.5_00009.1_g00006.1 29 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYESAEAAAYAYDRAAYKLRGE 79
                             59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.81E-172888No hitNo description
SMARTSM003802.0E-352992IPR001471AP2/ERF domain
PROSITE profilePS5103223.0242986IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-302987IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-222987IPR016177DNA-binding domain
PfamPF008471.9E-123079IPR001471AP2/ERF domain
PRINTSPR003671.0E-123041IPR001471AP2/ERF domain
PRINTSPR003671.0E-126888IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MSISTTSKTA PFQSSLYTQS YKFPEKKKLY RGVRQRHWGK WVAEIRLPQN RMRVWLGTYE  60
SAEAAAYAYD RAAYKLRGEY ARLNFPNLRD PSKLGFGDGE KMNAVKNAVD AKIQAICQKV  120
KRDKAKKAAK KKSENESKVK ETMDSSSSTT TTTTSSLVGG GNVISPSVSE DGLWKSEDST  180
CSVFGDCLKE PLMESEFDSC SLARMPSFDP ELIWEVIAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-202886160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-202686263ATERF1
3gcc_A4e-202686263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016555807.11e-117PREDICTED: ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W22e-56ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A2G2XK641e-116A0A2G2XK64_CAPBA; Ethylene-responsive transcription factor RAP2-13
TrEMBLA0A2G3ADG61e-116A0A2G3ADG6_CAPAN; Ethylene-responsive transcription factor
STRINGPGSC0003DMT4000316851e-114(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.15e-48ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]