PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00004.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 207aa    MW: 21865.7 Da    PI: 8.089
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00004.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.54e-3743131693
                      TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgk 89 
                              ++++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl++a+pai+++tgt++++a+++  +aes   s+s++s+++
  Sme2.5_00004.1_g00003.1  43 TTTKDRHTKVNGRGRRVRMPALCAARVFQLTKELGHRTDGETIEWLLRNAEPAIIAATGTGTIPATQVttTAESVPLSQSQPSAQS 128
                              689**************************************************************888643334334444333332 PP

                      TCP  90 aaks 93 
                              + +s
  Sme2.5_00004.1_g00003.1 129 Q-PS 131
                              2.22 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.4E-3143121IPR005333Transcription factor, TCP
PROSITE profilePS5136927.3964599IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MGSEMVVSGA IAGTGNGSAN SEPNDKNALV VVPKKKHSLS VSTTTKDRHT KVNGRGRRVR  60
MPALCAARVF QLTKELGHRT DGETIEWLLR NAEPAIIAAT GTGTIPATQV TTTAESVPLS  120
QSQPSAQSQP SALAPLTRAT PVSGFPTGGG FFSMTPQSQP NCRLDLCQPS LEFPGNAYRH  180
MPFTALLLQP VTAEDGEEKV AGEDEKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4963371e-109GQ496337.1 Solanum lycopersicum TCP transcription factor 19 (TCP19) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001233821.21e-126TCP transcription factor 19
SwissprotQ9SJK72e-42TCP11_ARATH; Transcription factor TCP11
TrEMBLA0A3Q7HYI71e-125A0A3Q7HYI7_SOLLC; Uncharacterized protein
TrEMBLG3BGV91e-125G3BGV9_SOLLC; TCP transcription factor 19
STRINGSolyc09g008030.1.11e-126(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37000.15e-33TCP family protein