PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc12g008830.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GATA | ||||||||
Protein Properties | Length: 294aa MW: 32442.3 Da PI: 10.1661 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60 | 2.9e-19 | 119 | 152 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp g+k+LCnaCG+++rk + Solyc12g008830.1.1 119 CSDCNTTKTPLWRSGPKGPKSLCNACGIRQRKAR 152 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.1E-17 | 113 | 164 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.43E-12 | 116 | 153 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.0E-15 | 117 | 152 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.532 | 117 | 149 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 7.51E-14 | 118 | 150 | No hit | No description |
Pfam | PF00320 | 5.8E-17 | 119 | 152 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 119 | 144 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MSLVSPYNNN YQFASSSTNS SCQNFFNIST TTNIQDQSGY DYQFHQPQHH HEVDNFASRS 60 SGSHDHVDKK NKGLKLTLWK KGGQKVKNLK VEDQKQQIIE TDYSSNSSSN NNIIPIRVCS 120 DCNTTKTPLW RSGPKGPKSL CNACGIRQRK ARRAAAAAAA ASTTPNNGTN FTSTETTTTT 180 TMKIKVQQQK HKITKVNANH VVPFKKRCKF LSSTTTPAPE PGLVPTPAPR VGSSSSSSFY 240 NNNNNDVQQK KKICFEDFFI NLSNNLAIHR VFPQDEKEAA ILLMALSSDL VHG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.14506 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc12g008830.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU639404 | 2e-06 | S.lycopersicum DNA sequence from clone LE_HBa-120K13 on chromosome 4, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004251667.1 | 0.0 | putative GATA transcription factor 22 | ||||
TrEMBL | M0ZH97 | 1e-128 | M0ZH97_SOLTU; Uncharacterized protein | ||||
STRING | Solyc12g008830.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3097 | 22 | 49 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56860.1 | 3e-19 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc12g008830.1.1 |
Publications ? help Back to Top | |||
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