PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g065110.1.1
Common NameLOC101265304
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HB-other
Protein Properties Length: 518aa    MW: 58242.4 Da    PI: 7.4566
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g065110.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.63.7e-172276357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                        kR   t+ q+e+Le+l+e+++yp+ e +++LA++ gLte+q++ WF+ rR k+k+
  Solyc11g065110.1.1 22 KRIIKTRAQIEALEKLYEEHKYPTDELKADLAESSGLTEKQISGWFCHRRLKDKR 76
                        78999************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-19376IPR009057Homeodomain-like
SuperFamilySSF466892.18E-151577IPR009057Homeodomain-like
PROSITE profilePS5007115.8721777IPR001356Homeobox domain
SMARTSM003896.3E-171981IPR001356Homeobox domain
PfamPF000469.6E-152276IPR001356Homeobox domain
CDDcd000866.72E-152276No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MMEDLSEVHS KDDKGQTEKN PKRIIKTRAQ IEALEKLYEE HKYPTDELKA DLAESSGLTE  60
KQISGWFCHR RLKDKRLSNG EIYINGRQDR SSGVIQDHGS GFRQDSCGST KQADDKKFDH  120
REVESRRLTG AEFSTADVAY EGGTHFRGKS NCMDDDSSRS SSSLRNECFS QNAEPYDKAT  180
SRYISQTLAT DFKGVRPKNG PSGYLKVKGQ VENAAITAVK RQLGRHYRLD GPPLGIEFDP  240
LPPGAFESSA PNLVNDSYYS PEPVPACSPD MSNVYRRSNG FGPNFKSNSH DSDLDGLSFK  300
RKSNSTHPEY RFNPKPKLKS SEYNEYPEWN SSLDMFEGSA RKMTVDSRDS CKLMAKHGRG  360
EIRTSTGSGN DLRSPYVGKV DREQVKPRFS SRSEVSLTAL EKEHLDRKPS DFNGSGYPNF  420
RERELHKIVE KDHISGKRPV VDENSNLVRV KVQVPRHNEI TIVQRAPVEV PDHQAYLRRA  480
SMIGMPPQTN HQISTAAEKP PSFSEDEETE DTSSFEG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.118760.0flower| fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g065110.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004250908.10.0uncharacterized protein LOC101265304
TrEMBLA0A3Q7IYS00.0A0A3Q7IYS0_SOLLC; Uncharacterized protein
STRINGSolyc11g065110.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34362242
Representative plantOGRP8823814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.13e-68HB-other family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]