PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc11g005380.1.1

Common Name

LOC101262765

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Trihelix

Protein Properties

Length: 496aa MW: 56244.2 Da PI: 7.7973

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc11g005380.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.2	1.3e-29	54	137	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++e+laL+++r+em+ ++r+++lk plW+e+s+km+e g++r++k+C+ek+en+ k++k++k+g+++r ++ +++++f+qle Solyc11g005380.1.1 54 RWPHEETLALLKIRSEMDVAFRDSNLKSPLWDEISRKMAELGYNRNAKKCREKFENIYKYHKRTKDGRSGR--QTGKNYRFFEQLE 137 8******************************************************************97..56668****97 PP
2	trihelix	96.1	3.2e-30	365	450	1	86
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev aLi++r++++ ++++ g++k+plWe++s m++ g+ r++k+Ckekwen+nk+y+++ke++kkr +e+s+tcpyf+ql+ Solyc11g005380.1.1 365 RWPKAEVEALIKLRTNVDLQYQDnGSSKGPLWEDISCGMKKLGYDRNAKRCKEKWENINKYYRRVKESQKKR-PEDSKTCPYFHQLD 450 8*******************7589*****************************************8.99********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	1.2E-4	51	113	IPR001005	SANT/Myb domain
CDD	cd12203	1.57E-24	53	118	No hit	No description
PROSITE profile	PS50090	7.445	53	111	IPR017877	Myb-like domain
Pfam	PF13837	2.3E-20	53	137	No hit	No description
SMART	SM00717	1.9	362	425	IPR001005	SANT/Myb domain
CDD	cd12203	6.40E-22	364	430	No hit	No description
PROSITE profile	PS50090	6.679	364	423	IPR017877	Myb-like domain
Pfam	PF13837	3.5E-23	364	452	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MLESSVLLEN TAAGGAVTGA DGEASELKNE GGGGGGSVGG GSEEEDKNFS GGNRWPHEET 60 LALLKIRSEM DVAFRDSNLK SPLWDEISRK MAELGYNRNA KKCREKFENI YKYHKRTKDG 120 RSGRQTGKNY RFFEQLELLD SQSLFSSPPL NHSQINRMET MPVPMPMPMT MIKPAASGCQ 180 DFGMDHSRVR GFNPGFMSTS TSTTSSSGKE SDGSVKKKRK LASYFERLMK EVLDKQEDLQ 240 NKFLEAMEKC EKDRIARDEA WKMQEIARLK KEQEALAHER AISAAKDAAV IAFLQKVSDQ 300 TIQLQLPTDL PHRHTEERES ESMKTIGNQE NVVMQQDNDK ENIDKQEIDS AGENSNSFQT 360 NSSSRWPKAE VEALIKLRTN VDLQYQDNGS SKGPLWEDIS CGMKKLGYDR NAKRCKEKWE 420 NINKYYRRVK ESQKKRPEDS KTCPYFHQLD SIYQNKSKKQ LPIMETPGSN MKAGEILMQI 480 INQQQQQQAL ERTEC*

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MLESSVLLEN TAAGGAVTGA DGEASELKNE GGGGGGSVGG GSEEEDKNFS GGNRWPHEET  60
LALLKIRSEM DVAFRDSNLK SPLWDEISRK MAELGYNRNA KKCREKFENI YKYHKRTKDG  120
RSGRQTGKNY RFFEQLELLD SQSLFSSPPL NHSQINRMET MPVPMPMPMT MIKPAASGCQ  180
DFGMDHSRVR GFNPGFMSTS TSTTSSSGKE SDGSVKKKRK LASYFERLMK EVLDKQEDLQ  240
NKFLEAMEKC EKDRIARDEA WKMQEIARLK KEQEALAHER AISAAKDAAV IAFLQKVSDQ  300
TIQLQLPTDL PHRHTEERES ESMKTIGNQE NVVMQQDNDK ENIDKQEIDS AGENSNSFQT  360
NSSSRWPKAE VEALIKLRTN VDLQYQDNGS SKGPLWEDIS CGMKKLGYDR NAKRCKEKWE  420
NINKYYRRVK ESQKKRPEDS KTCPYFHQLD SIYQNKSKKQ LPIMETPGSN MKAGEILMQI  480
INQQQQQQAL ERTEC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	215	220	KKKRKL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.6879	0.0	callus\| flower\| fruit\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc11g005380.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004249868.1	0.0	trihelix transcription factor GT-2
Swissprot	Q39117	1e-124	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A3Q7IP07	0.0	A0A3Q7IP07_SOLLC; Uncharacterized protein
STRING	Solyc11g005380.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9794	23	28
Representative plant	OGRP663	15	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	3e-71	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Solyc11g005380.1.1
Entrez Gene	101262765

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]