PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g075030.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 880aa    MW: 97203.3 Da    PI: 6.903
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g075030.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.91.9e-18322422199
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++ 
  Solyc10g075030.1.1 322 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD- 410
                         99**************************555567778***************9989999999***9.********************876. PP

                         SEE..EEEEE-S CS
                  B3  88 sefelvvkvfrk 99 
                          e++l+++++++
  Solyc10g075030.1.1 411 PEGKLLMGFRKA 422
                         888888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-29314423IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-19319421IPR015300DNA-binding pseudobarrel domain
CDDcd100172.95E-22320421No hitNo description
PfamPF023626.5E-16322422IPR003340B3 DNA binding domain
SMARTSM010191.9E-20322423IPR003340B3 DNA binding domain
PROSITE profilePS5086311.152322423IPR003340B3 DNA binding domain
PROSITE profilePS5105014.044586636IPR011124Zinc finger, CW-type
PfamPF074966.0E-12591633IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 880 aa     Download sequence    Send to blast
MESKICMNGL CGTTSSIEWK KGWPLRSGEF ATLCDKCGNA YEQLLFCDLF HSEDTGWREC  60
ISCGKRLHCG CIASSSLLEL LDSGGINCIS CVRSCQQHAT PNHEKPKAFG TSISNSVGET  120
ASTSLGSQIN GSEPNKREGS DSIDPALLLL HQNDNTNSPI GQIKMEETFH PAGESGSTFS  180
SNLFQASAEF SKNAKLDSYN GYKGVVEIHG STVQTNLSIA LSAPSPNSKL FPTTLDEGDL  240
NKTISSLQQG SRSRNLLPKP PKSASALGPE MNAGIISQIR VARPPVEGRI KNQLLPRYWP  300
RITDQELQQI SGDSNSTIIP LFEKVLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLR  360
IQDVKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLLMGFR  420
KASTVKITQE NRLSAIPKNV FSTEPTSFSA MPENLPLMSG YSGLLQSFKG SRESSVNLSS  480
KHFNSGDFSW YLTEKNGGRN ADGAFSPSMP VSERKRSRNI GSKSKRLLID AHDALELKLS  540
WEELQDMLRP PLSVQPTTVT IEDQEFEEYE QPPVLGKRSI FTVRLSGEQE QWAQCDNCFK  600
WRKLPADYLL PPHWTCQDNI SDHSRSSCSI PDDLTPRELE NLFKMDKDFK KQRSAAGQRI  660
TQAHDSSDLD SQANGISIAG DLGEPGPASV ATTTKHPRHR PGCSCIVCIQ PPSGKGKHNP  720
TCTCNVCMTV KRRFKTLMMR KKKRQSEREA ELGQRNQLMW SSKEETEVDS FSRPVKPEVD  780
PSEKERSGSE TLARGHSSYQ LQKLPEITCL PLETYLRQNG LTSLVSEQQG SSGSQGLPQD  840
TRESDLRVQE DLCLASTAQE QEKDVPKENS EPDQTGKDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-673004232125B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1730741KRRFKTLMMRKK
2730743KRRFKTLMMRKKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.162850.0flower| fruit| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g075030.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249040.10.0B3 domain-containing transcription repressor VAL2 isoform X2
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2G2YL690.0A0A2G2YL69_CAPAN; Uncharacterized protein
STRINGSolyc10g075030.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]