PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g047640.1.1 | ||||||||
Common Name | LOC101055511 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GATA | ||||||||
Protein Properties | Length: 312aa MW: 32827.1 Da PI: 5.5851 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.4 | 3e-16 | 225 | 260 | 1 | 34 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cgt++ Tp++Rrgp g+++LCnaCGl ++ kg Solyc10g047640.1.1 225 CRHCGTSSksTPMMRRGPAGPRSLCNACGLTWANKG 260 ********************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 13.127 | 89 | 124 | IPR010399 | Tify domain |
SMART | SM00979 | 2.6E-10 | 89 | 124 | IPR010399 | Tify domain |
Pfam | PF06200 | 4.6E-11 | 93 | 123 | IPR010399 | Tify domain |
Pfam | PF06203 | 3.3E-16 | 156 | 198 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.245 | 156 | 198 | IPR010402 | CCT domain |
SMART | SM00401 | 5.6E-9 | 219 | 272 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 8.906 | 219 | 267 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.65E-12 | 220 | 275 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.9E-15 | 224 | 266 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.24E-14 | 225 | 267 | No hit | No description |
Pfam | PF00320 | 2.0E-14 | 225 | 260 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 225 | 252 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MTAAVQREGQ QQTHFADDGD DDDVDVAGGG GGGGMESIED SSHHIGYDHN HHGLHNGTDG 60 TIATTAAALN GVEGVPHNSL YVPGSEMVGG GSSDQLTLSF RGEVFVYDAV SPEKVQAVLL 120 LLGGYEVPAG IPTVNMASQS HRASSEGPGR LNQPQRAASL SRFREKRKER CFDKKIRYTV 180 RKEVALRMQR KKGQFTSSKT VSDEAASSSA EGNAGSSQEE QETLCRHCGT SSKSTPMMRR 240 GPAGPRSLCN ACGLTWANKG ILRDLSKVST TGAQELSVKS SEQNGEADGS DVMAAAGIIT 300 SDDENMVLPS E* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.9547 | 0.0 | fruit| leaf| root| trichome |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00198 | DAP | Transfer from AT1G51600 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g047640.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ261227 | 0.0 | Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI008 mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001265920.1 | 0.0 | Hop-interacting protein THI008 | ||||
Swissprot | Q8H1G0 | 7e-80 | GAT28_ARATH; GATA transcription factor 28 | ||||
TrEMBL | G8Z249 | 0.0 | G8Z249_SOLLC; Hop-interacting protein THI008 | ||||
STRING | Solyc10g047640.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2672 | 23 | 48 | Representative plant | OGRP831 | 16 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 4e-77 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g047640.1.1 |
Entrez Gene | 101055511 |