PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc09g082500.2.1

Common Name

LOC101253425

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

CPP

Protein Properties

Length: 830aa MW: 89418.9 Da PI: 5.8771

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g082500.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	51	2.9e-16	524	562	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkkskClk+YCeCfaag++C e C C+dC+Nk Solyc09g082500.2.1 524 ACKRCNCKKSKCLKLYCECFAAGVYCVEPCACQDCFNKP 562 589**********************************96 PP
2	TCR	51	2.8e-16	609	647	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN Solyc09g082500.2.1 609 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 647 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.7E-17	523	564	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.557	524	649	IPR005172	CRC domain
Pfam	PF03638	1.0E-11	526	561	IPR005172	CRC domain
SMART	SM01114	7.5E-18	609	650	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	8.2E-12	611	647	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 830 aa Download sequence Send to blast
MSKKEGGNEK VSLESENVEV EVEAEGRKSE VSVKGEEGGG GGGGGVVVVM DTPERNKSQI 60 ATPISKFEES PFSNFLNNLS PIKPVKAAHF PQTLNTLSFG SIPSVFTSPH VSSARESRFL 120 RRHLLSDPSK PEFASDNSGK VDNDEGMSDA VNSSNEPKES LGSQNSVVEA SNECSKLAVE 180 RTLNYECNDS PSTLPTGSFR GKSLSEFAGS SVTYVPLVQG MSGKGLLRCE VNTEGKNELD 240 PNKEAPGCDW ENLICDATDL LIFDSPGDPE AFTKAAGPNL RHFGFASNEM QNMQVFGQAS 300 TSECGVDGSE TEKPSTQPAD ETQVNEYAEN QKMKPDSSLT NDGIGVGQSE RTDNEMVSTL 360 YRGMRRRCLV FEMVGSRRKH VDEGSGSSAV QGTDGNLACN EKQLVPYKAV SESSRCILPG 420 IGLHLNALAA SSKDGKVVKH ETNASGKQLL ITPGSAVSLH PLVAGQESMS KSLPETSQEI 480 VPFENSVPLM EDASLAPGYV NNEELSQTSP KKKRRRLEPG EGEACKRCNC KKSKCLKLYC 540 ECFAAGVYCV EPCACQDCFN KPIHEDTVLA TRKQIESRNP LAFAPKVIRN ADTISETGDD 600 SSKTPASARH KRGCNCKKSG CLKKYCECYQ GGVGCSINCR CEGCKNAFGR KDGSVFIGTD 660 GDAEEEETDA YEKSTVDRAS HKNLLHSDVE LNPDSTVPAT PLAFRRPPMQ LPFSLKNKPP 720 RSSFLSIGSS SGIFAGQGVG RPDFFQPQPQ PQPQPKFEKP FESVKEDEMP EILQQGGTSS 780 PISGIKTASP NRKRVSPPHC DFANSPSRRS SRKLILQSIP SFPSLTPNP*

Sequence ? help Back to Top

Protein Sequence Length: 830 aa Download sequence Send to blast

MSKKEGGNEK VSLESENVEV EVEAEGRKSE VSVKGEEGGG GGGGGVVVVM DTPERNKSQI  60
ATPISKFEES PFSNFLNNLS PIKPVKAAHF PQTLNTLSFG SIPSVFTSPH VSSARESRFL  120
RRHLLSDPSK PEFASDNSGK VDNDEGMSDA VNSSNEPKES LGSQNSVVEA SNECSKLAVE  180
RTLNYECNDS PSTLPTGSFR GKSLSEFAGS SVTYVPLVQG MSGKGLLRCE VNTEGKNELD  240
PNKEAPGCDW ENLICDATDL LIFDSPGDPE AFTKAAGPNL RHFGFASNEM QNMQVFGQAS  300
TSECGVDGSE TEKPSTQPAD ETQVNEYAEN QKMKPDSSLT NDGIGVGQSE RTDNEMVSTL  360
YRGMRRRCLV FEMVGSRRKH VDEGSGSSAV QGTDGNLACN EKQLVPYKAV SESSRCILPG  420
IGLHLNALAA SSKDGKVVKH ETNASGKQLL ITPGSAVSLH PLVAGQESMS KSLPETSQEI  480
VPFENSVPLM EDASLAPGYV NNEELSQTSP KKKRRRLEPG EGEACKRCNC KKSKCLKLYC  540
ECFAAGVYCV EPCACQDCFN KPIHEDTVLA TRKQIESRNP LAFAPKVIRN ADTISETGDD  600
SSKTPASARH KRGCNCKKSG CLKKYCECYQ GGVGCSINCR CEGCKNAFGR KDGSVFIGTD  660
GDAEEEETDA YEKSTVDRAS HKNLLHSDVE LNPDSTVPAT PLAFRRPPMQ LPFSLKNKPP  720
RSSFLSIGSS SGIFAGQGVG RPDFFQPQPQ PQPQPKFEKP FESVKEDEMP EILQQGGTSS  780
PISGIKTASP NRKRVSPPHC DFANSPSRRS SRKLILQSIP SFPSLTPNP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	8e-18	528	646	14	120	Protein lin-54 homolog
5fd3_B	8e-18	528	646	14	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	509	516	PKKKRRRL
2	510	515	KKKRRR
3	512	516	KRRRL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00624	PBM	Transfer from PK22848.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc09g082500.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004247675.2	0.0	protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBL	M1D5M1	0.0	M1D5M1_SOLTU; Uncharacterized protein
STRING	Solyc09g082500.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2467	23	45
Representative plant	OGRP993	17	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-163	TESMIN/TSO1-like CXC 2

Link Out ? help Back to Top
Phytozome	Solyc09g082500.2.1
Entrez Gene	101253425

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]