PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc09g014690.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | LBD | ||||||||
Protein Properties | Length: 175aa MW: 19942.6 Da PI: 8.793 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 91.5 | 1e-28 | 9 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +Caa k++r++C+++C+lap fp+++ ++f+nv +l+ +s+++++l+++ ++e++ +++++l+ eA++r ++PvyG++++ +kl+ q+e++ Solyc09g014690.1.1 9 KCAAFKYQRKRCQENCPLAPFFPSNKFEDFKNVSRLYKVSTIIEMLNSVaDNEKKAKMVETLILEAKIRSENPVYGSIAIQNKLKLQIEET 99 5***********************************************9455558999********************************* PP DUF260 91 kaelallke 99 +e++l+k+ Solyc09g014690.1.1 100 MKEIDLVKK 108 ****99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.08 | 8 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.8E-29 | 9 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MNDADAKGKC AAFKYQRKRC QENCPLAPFF PSNKFEDFKN VSRLYKVSTI IEMLNSVADN 60 EKKAKMVETL ILEAKIRSEN PVYGSIAIQN KLKLQIEETM KEIDLVKKTT DYFKELRKRA 120 FFPKKNEETS TSGTQSFQGH KSDSTLEKAT SITENLANQD VEKDRVHFND NDGT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-16 | 5 | 104 | 7 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-16 | 5 | 104 | 7 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc09g014690.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010326135.2 | 1e-119 | LOB domain-containing protein 24-like | ||||
TrEMBL | A0A3Q7HYK9 | 2e-72 | A0A3Q7HYK9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g014690.1.1 | 1e-126 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2866 | 17 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 1e-23 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Solyc09g014690.1.1 |
Publications ? help Back to Top | |||
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