PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g014690.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 175aa    MW: 19942.6 Da    PI: 8.793
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g014690.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.51e-289108199
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +Caa k++r++C+++C+lap fp+++ ++f+nv +l+ +s+++++l+++ ++e++ +++++l+ eA++r ++PvyG++++ +kl+ q+e++
  Solyc09g014690.1.1   9 KCAAFKYQRKRCQENCPLAPFFPSNKFEDFKNVSRLYKVSTIIEMLNSVaDNEKKAKMVETLILEAKIRSENPVYGSIAIQNKLKLQIEET 99 
                         5***********************************************9455558999********************************* PP

              DUF260  91 kaelallke 99 
                          +e++l+k+
  Solyc09g014690.1.1 100 MKEIDLVKK 108
                         ****99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.088110IPR004883Lateral organ boundaries, LOB
PfamPF031953.8E-299107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MNDADAKGKC AAFKYQRKRC QENCPLAPFF PSNKFEDFKN VSRLYKVSTI IEMLNSVADN  60
EKKAKMVETL ILEAKIRSEN PVYGSIAIQN KLKLQIEETM KEIDLVKKTT DYFKELRKRA  120
FFPKKNEETS TSGTQSFQGH KSDSTLEKAT SITENLANQD VEKDRVHFND NDGT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-1651047105LOB family transfactor Ramosa2.1
5ly0_B7e-1651047105LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g014690.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010326135.21e-119LOB domain-containing protein 24-like
TrEMBLA0A3Q7HYK92e-72A0A3Q7HYK9_SOLLC; Uncharacterized protein
STRINGSolyc09g014690.1.11e-126(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28661752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.11e-23LOB domain-containing protein 24
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]