PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc08g007190.2.1 | ||||||||
Common Name | LOC101260660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GATA | ||||||||
Protein Properties | Length: 543aa MW: 60329.6 Da PI: 7.4817 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.4 | 6.2e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Solyc08g007190.2.1 7 CYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 41 ****************66666***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 4.4E-10 | 1 | 53 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.04E-11 | 4 | 46 | No hit | No description |
CDD | cd00202 | 2.73E-16 | 6 | 55 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.8E-12 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.2 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 9.9E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 2.8E-9 | 282 | 363 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MGKEGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLANYTPLHA RAEPCDFEEH 60 RVSRFKNISM KNKEAKILKR KQSHHDAEVG TPDYSLGFRK VLDEDTSNRS SSGSAISNSE 120 SCAQFGSAEA SDLTGPAQSN IWDSTVPSRK RTCFNRPKPS SVEKLTKDLY TILHEQQSSY 180 LSASSEEELL FESDKPMVSV EIGHGSVLMR YPSTIGREEE SEASSLSVDN KHRSVSDAYS 240 RLTTPPVNIS KGVNSPNMGT ERIKKPTGPA IEQDQIKRNK DHLEKLQILG HHNSPLRYLD 300 LKDVLNYEEF TTHLSSDEQQ QLLKYLPPVD SFAPPDSLRS VFESSQFEEN LCSFQKLLAE 360 GVFDNSFPGV TLEDCRNLKR FILCYLTKSK WVQQYNLLKD TKCKNSSSGS EVAGEPNAVG 420 TCHSANVKKP REGQYPKCSG AKTTMKSPKR VVMKSIYEQK ELVDNDGSCF SPRSSFALPS 480 ENSSLVLDSL RSANENSHQD LLLDVPSNSY CPQAELLLPT SSFTTQASTS SSSMYPPHFI 540 RP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc08g007190.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004244556.1 | 0.0 | GATA transcription factor 26-like | ||||
Swissprot | Q8W4H1 | 1e-146 | GAT26_ARATH; GATA transcription factor 26 | ||||
TrEMBL | A0A3Q7HK81 | 0.0 | A0A3Q7HK81_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g007190.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2089 | 24 | 62 | Representative plant | OGRP2749 | 15 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 1e-138 | GATA transcription factor 26 |
Link Out ? help Back to Top | |
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Phytozome | Solyc08g007190.2.1 |
Entrez Gene | 101260660 |
Publications ? help Back to Top | |||
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