PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g054220.1.1
Common NameLOC101264838
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 391aa    MW: 44437.9 Da    PI: 5.3945
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g054220.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-18180229255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+g
  Solyc07g054220.1.1 180 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAYKLRG 229
                         59******9.**********955...5*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.28E-33179239No hitNo description
SMARTSM003802.5E-37180243IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-32180238IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-22180238IPR016177DNA-binding domain
PROSITE profilePS5103222.866180237IPR001471AP2/ERF domain
PRINTSPR003676.2E-11181192IPR001471AP2/ERF domain
PfamPF008476.2E-12181229IPR001471AP2/ERF domain
PRINTSPR003676.2E-11203219IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MATPPEEPME FDDNTFERQQ RRPVFEEASM SNRRFKKIKS PERQSSVQQP FDHRNNPTPM  60
AFPPPPSSSR LVFPFAFDGT QQSMESSSPL GANAMPLFHP QQQNQQQMIS FSPQQCLYPP  120
YFAGELGPSQ NQQQMLRYWN ETLNLSPRGR MMMMSRLGQD NRGYFRPQQV QVQPISATKL  180
YRGVRQRHWG KWVAEIRLPR NRTRLWLGTF DTAEDAAMAY DREAYKLRGD NAKLNFPEHF  240
IGKDRGETST EANSSSITTH ESSLPEHNSE SLQLQTVNNE QLPPSPPPQP PPEGDNHDED  300
SGIGSSQVTT NSQSSELVWG DMAEAWFNAT GWGPGSPVWD DLDTNNNLMF SPNLHFGNFS  360
QQEPHDSDPH QHHDTNSDPS SPSCPMRPFF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20179237160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-20179237463ATERF1
3gcc_A4e-20179237463ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g054220.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153558e-06Solanum lycopersicum chromosome 2 clone C02HBa0012A12, complete sequence
GenBankAC2336438e-06Solanum lycopersicum chromosome 2 clone C02HBa0208N01, complete sequence
GenBankAC2336958e-06Solanum lycopersicum chromosome 2 clone C02HBa0208N01, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243339.10.0ethylene-responsive transcription factor ERF054
TrEMBLA0A3Q7HCK30.0A0A3Q7HCK3_SOLLC; Uncharacterized protein
STRINGSolyc07g054220.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA47182136
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.19e-55ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]