PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g075330.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | LBD | ||||||||
Protein Properties | Length: 243aa MW: 27933.1 Da PI: 8.7836 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 98.5 | 6.4e-31 | 95 | 178 | 17 | 100 |
DUF260 17 vlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 vlapyfp ++p kf ++h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la++++e Solyc06g075330.1.1 95 VLAPYFPPSEPIKFTIAHRVFGASNIIKFLQELPEYQRADAVSSMVYEANARMRDPVYGSAGAICQLQKQVNELQAQLAKTQAE 178 89******************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.238 | 78 | 179 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.0E-30 | 95 | 176 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MLSTNEGIRL IGHLATSSRH FDHQFSVIII IIIMFFDHLF LLIFRWSPTK RRSPPQHRRL 60 PALYCRQLTL HLHRGWWPHL VLPVRYYEGD ARRNVLAPYF PPSEPIKFTI AHRVFGASNI 120 IKFLQELPEY QRADAVSSMV YEANARMRDP VYGSAGAICQ LQKQVNELQA QLAKTQAELV 180 NIQCQQANLM AFVYMEMGPS PPTSPQQSLD KFTNSTTHDT IQNNMSFLDE NNSYGTLETL 240 WT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-30 | 95 | 186 | 27 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-30 | 95 | 186 | 27 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g075330.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015079078.1 | 1e-105 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 2e-50 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 6e-50 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | M1AC13 | 1e-102 | M1AC13_SOLTU; Uncharacterized protein | ||||
STRING | Solyc06g075330.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 6e-53 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g075330.1.1 |
Publications ? help Back to Top | |||
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