PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g008740.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 382aa    MW: 41500.7 Da    PI: 8.231
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g008740.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.83.1e-124469227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                        +t++C+f++rtG C yG++C+++H+p
  Solyc06g008740.2.1 44 GTSNCSFYMRTGSCGYGAKCRYNHPP 69
                        799*********************97 PP
2zf-CCCH33.66.8e-1190114327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C++++rt tCk+G++CkF+H++
  Solyc06g008740.2.1  90 EPTCQYYLRTATCKFGASCKFHHPR 114
                         689********************96 PP
3zf-CCCH37.44.3e-12135159226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          +++C+++++tG+Ck+G +CkF+H+
  Solyc06g008740.2.1 135 EERECSYYLKTGQCKFGITCKFHHP 159
                         5799********************9 PP
4zf-CCCH41.52.3e-13290315126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ++++ C+++++tG Ck+G++CkF+H+
  Solyc06g008740.2.1 290 PGQPVCQYYMKTGDCKFGSSCKFHHP 315
                         5789*********************8 PP
5zf-CCCH34.34.1e-11339362427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                           C+f+++ G+Ck+G++CkF H++
  Solyc06g008740.2.1 339 QSCSFYMQRGFCKFGGTCKFDHPM 362
                         56********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.9574270IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-64269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-64370IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-104469IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-64568IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.46987115IPR000571Zinc finger, CCCH-type
SMARTSM003560.001487114IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-890114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-591115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-493114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5134161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.413134161IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9135159IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-5135160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4139159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.173289317IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-7289316IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10291315IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6292317IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-6294315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.169335363IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5335362IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8338362IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6338366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4341360IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MELYGGSHSD RQSEWVPVGP ETGLEESMRR LGLWRREPYP ERSGTSNCSF YMRTGSCGYG  60
AKCRYNHPPD RSSVGAVLLE SSEYPERIGE PTCQYYLRTA TCKFGASCKF HHPRNLGGSL  120
SNISLNVYGY PLHPEERECS YYLKTGQCKF GITCKFHHPD HAEVSAPVTA RPFYPTSPSL  180
PVPPEEYNST STSSRVAGPQ LLPGPYVPGT YGPVLLHPGV VTIQNWSTYS GPVSPALSPG  240
AQPSAGMATI YGMPQLASST AAFAAPYSPL HSAAGPSSSA LRENRFPERP GQPVCQYYMK  300
TGDCKFGSSC KFHHPADWIA SKTDCTFSPL GLPLRPGVQS CSFYMQRGFC KFGGTCKFDH  360
PMGTVRYSPS ASSLPDIPNA P*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.67450.0flower| fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g008740.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240519.30.0zinc finger CCCH domain-containing protein 32
SwissprotQ84W911e-159C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A3Q7HJP50.0A0A3Q7HJP5_SOLLC; Uncharacterized protein
STRINGSolyc06g008740.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66222034
Representative plantOGRP28651131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-151C3H family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]