PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g053500.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GATA | ||||||||
Protein Properties | Length: 246aa MW: 27875.1 Da PI: 7.7809 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 62.1 | 6.8e-20 | 179 | 212 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cg+ kTp+WR gp g+ktLCnaCG++y++ + Solyc05g053500.2.1 179 CQHCGVDKTPQWRAGPTGPKTLCNACGVRYKSGR 212 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.4E-16 | 173 | 223 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.387 | 173 | 209 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.98E-16 | 175 | 236 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.1E-15 | 176 | 210 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.43E-15 | 178 | 227 | No hit | No description |
Pfam | PF00320 | 1.0E-17 | 179 | 212 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 179 | 204 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
METMYSKTCF MVDDDILNFS LDDDEEKYQT SSSSFESSNT LGFRQDDHNP SFPDYVEEEL 60 EWLSNKDAFP AVEFDLFSDH VIFDHHSPNS VLENNNNNCN VNLKDNAFTS HASSLLQVPM 120 NHPVGTRSKR RRRIALQCDN SCVWGNQVKF NNTSTKQGLT LLKISMAKAK RGTSIGRTCQ 180 HCGVDKTPQW RAGPTGPKTL CNACGVRYKS GRLFPEYRPA NSPTFSVELH SNSHRKVLEM 240 RKQRI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 133 | KRRRRI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.6452 | 0.0 | cell culture| fruit| leaf |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00377 | DAP | Transfer from AT3G24050 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g053500.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004239871.1 | 0.0 | GATA transcription factor 1 | ||||
TrEMBL | A0A3Q7GM02 | 0.0 | A0A3Q7GM02_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g053500.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4076 | 24 | 45 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 3e-43 | GATA transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g053500.2.1 |
Publications ? help Back to Top | |||
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