PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g018740.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ZF-HD | ||||||||
Protein Properties | Length: 120aa MW: 13674.5 Da PI: 9.2769 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 70.5 | 2.8e-22 | 14 | 67 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +++Y ClkNhA + G ++vDGC+Ef++ g++gt++a Ca CgC R+FHR ++ Solyc05g018740.1.1 14 TIKYGICLKNHATNFGDYSVDGCREFVKR-GDDGTKEAYICANCGCLRSFHRMNS 67 789*************************8.999*******************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-12 | 14 | 64 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.1E-22 | 15 | 67 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.9E-16 | 16 | 65 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 19.282 | 17 | 66 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MSNNSSSNPS GDMTIKYGIC LKNHATNFGD YSVDGCREFV KRGDDGTKEA YICANCGCLR 60 SFHRMNSHSL YHPPILRSRF LHPHIHPHGR ENAPIISHPF MSRFVLVQYI RRPVFYNHP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g018740.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC247170 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 5 clone sle-13l10 map 5, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3Q7GF12 | 2e-83 | A0A3Q7GF12_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g018740.1.1 | 4e-84 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13748 | 6 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28917.1 | 3e-18 | mini zinc finger 2 |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g018740.1.1 |
Publications ? help Back to Top | |||
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