PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc03g113360.2.1 | ||||||||
Common Name | LOC101251172 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 304aa MW: 33912.7 Da PI: 5.5965 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116.6 | 1.5e-36 | 10 | 109 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 aCaaCk++rr+C dC+lapyfpa+qpk f+n+h+lFG+sn+lk+l++l++++++ am+s++y+A+ar + PvyG+v+ i++l +++ + Solyc03g113360.2.1 10 ACAACKYQRRRCH-DCPLAPYFPADQPKMFQNAHRLFGVSNILKILRQLDPSQKKVAMRSIIYQANARDKYPVYGCVAEIQNLLYNIQFYE 99 7***********6.8**************************************************************************** PP DUF260 92 aelallkeel 101 +el++++++l Solyc03g113360.2.1 100 EELQAVNAQL 109 ****999875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.197 | 9 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.4E-35 | 10 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 304 aa Download sequence Send to blast |
MTLKGGTSQA CAACKYQRRR CHDCPLAPYF PADQPKMFQN AHRLFGVSNI LKILRQLDPS 60 QKKVAMRSII YQANARDKYP VYGCVAEIQN LLYNIQFYEE ELQAVNAQLT FYRQQQQQQE 120 ISTSLSDSVS QIQLGMPPPV SASTPANGNG LTLFHQDIHQ DMTSPYNVAA NAVLPVQSYP 180 SYSNNNYAAY NNTTFVDPKE NNAVNSLWIQ QSYGNNVCNN NIMQSQLPAS QTLVVPQEVT 240 QDYDGIHPYF DGIDDRQSYN GSKDAYESSS ESSLKDTRQS MEHVAENELK NAAACFTLTS 300 ING* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-26 | 6 | 112 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-26 | 6 | 112 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc03g113360.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004236523.1 | 0.0 | LOB domain-containing protein 27 | ||||
TrEMBL | M1B0F5 | 0.0 | M1B0F5_SOLTU; Uncharacterized protein | ||||
STRING | Solyc03g113360.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1449 | 23 | 75 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G47870.1 | 2e-51 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc03g113360.2.1 |
Entrez Gene | 101251172 |
Publications ? help Back to Top | |||
---|---|---|---|
|