PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g091930.2.1
Common NameLOC101246982
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 269aa    MW: 29897.8 Da    PI: 8.2052
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g091930.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13.1e-18123177256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++tk q   Lee F+ +++++ +++++LA++l+L  rqV vWFqNrRa+ k
  Solyc02g091930.2.1 123 RKKLRLTKPQSALLEESFKIHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTK 177
                         788899***********************************************98 PP
2HD-ZIP_I/II124.16.4e-40123212191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rl+k q++lLEesF+ +++L+p++K++lareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
  Solyc02g091930.2.1 123 RKKLRLTKPQSALLEESFKIHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHKELQELK-AL 212
                         69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.97E-18111180IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-17113173IPR009057Homeodomain-like
PROSITE profilePS5007117.297119179IPR001356Homeobox domain
SMARTSM003893.7E-15121183IPR001356Homeobox domain
CDDcd000867.67E-16123180No hitNo description
PfamPF000469.7E-16123177IPR001356Homeobox domain
PROSITE patternPS000270154177IPR017970Homeobox, conserved site
SMARTSM003409.2E-25179222IPR003106Leucine zipper, homeobox-associated
PfamPF021831.0E-10179213IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGFDDICNTG LVLGLGFSST ADHKSKKITT TPLVGKGPCV GFEEPSLTLS LISGDRTYEQ  60
QAMKISKDHQ SADLYRQDSA ASSYSNASVK RERDVGSEET TTEVERLSSR VISDEDDDGS  120
NARKKLRLTK PQSALLEESF KIHSTLNPKQ KQDLARELNL RPRQVEVWFQ NRRARTKLKQ  180
TEVDCEFLKK CCETLTDENR RLHKELQELK ALKIAQPLYM QLPAATLTMC PSCERIGGGV  240
GETPSKNAFT IAQKPHLYSP FNNPSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171179RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.91100.0cell culture| flower| fruit| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g091930.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231956.10.0homeobox-leucine zipper protein HAT22
SwissprotP466041e-95HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A3Q7FB320.0A0A3Q7FB32_SOLLC; Uncharacterized protein
STRINGSolyc02g091930.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Representative plantOGRP19616156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.16e-98HD-ZIP family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]