PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g067310.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ZF-HD | ||||||||
Protein Properties | Length: 293aa MW: 32086.8 Da PI: 8.1973 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 109.6 | 1.7e-34 | 62 | 119 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 v Y+eClkNhAaslGghavDGCgEf+ps+ ++ +++++lkCaACgCHRnFHRre+ee Solyc02g067310.2.1 62 VVIYRECLKNHAASLGGHAVDGCGEFLPSPAANpSDPTSLKCAACGCHRNFHRREPEE 119 589******************************9*********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 6.6E-29 | 63 | 117 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.084 | 65 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-23 | 65 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.3E-30 | 65 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 5.08E-19 | 192 | 265 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.5E-30 | 192 | 266 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.5E-26 | 204 | 261 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MELTNNNNTT ISTITTTTTV KTPEAEIETP TQIQKLKPFP FSNGVLKRKS SFNHNNHHHP 60 VVVIYRECLK NHAASLGGHA VDGCGEFLPS PAANPSDPTS LKCAACGCHR NFHRREPEEP 120 VVIPPPPIAT AVLEYQPHHR HHPPHPPPPL QGEHSSPNSP SPPPISSAYY PASAPHMLLA 180 LSAGFSGEKN QNPTSAPLGH SNGRKRFRTK FTPDQKVKMQ EFAERVGWKM QKRDEDLVSN 240 FCNEIGVEKG VLKVWMHNNK NTFGKKSDQP NSGSGDGDND NDDNHHQNAT SA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-20 | 205 | 262 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.19929 | 0.0 | flower| leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers, stems and inflorescence and, to a lower extent, in leaves and stems. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00387 | DAP | Transfer from AT3G28920 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g067310.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019067768.1 | 0.0 | zinc-finger homeodomain protein 10 | ||||
Swissprot | Q9LHF0 | 3e-72 | ZHD9_ARATH; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A3Q7F0T0 | 0.0 | A0A3Q7F0T0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g067310.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1088 | 24 | 85 | Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 5e-64 | homeobox protein 34 |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g067310.2.1 |
Publications ? help Back to Top | |||
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