PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g109240.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 122aa    MW: 14015.2 Da    PI: 8.2656
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g109240.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601261.9e-3951051101
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk lrrkC+++C++ pyfp ++p++f +vh+++Gasnv k+l++++e++r d+++sl+yeA +r+++PvyG+vg+i+ l++++ +++
  Solyc01g109240.1.1   5 RCAACKQLRRKCPSNCIFLPYFPPNNPQRFLYVHRIYGASNVGKMLQQVEEHQRGDVADSLYYEAYCRIKNPVYGCVGIITVLHEEIYHVQ 95 
                         6****************************************************************************************** PP

              DUF260  92 aelallkeel 101
                          +la++++++
  Solyc01g109240.1.1  96 CQLAKVQAQI 105
                         ******9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.2924105IPR004883Lateral organ boundaries, LOB
PfamPF031956.3E-395102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MSSTRCAACK QLRRKCPSNC IFLPYFPPNN PQRFLYVHRI YGASNVGKML QQVEEHQRGD  60
VADSLYYEAY CRIKNPVYGC VGIITVLHEE IYHVQCQLAK VQAQIDLLYQ NGLYTLDPSF  120
Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3521058111LOB family transfactor Ramosa2.1
5ly0_B2e-3521058111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g109240.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016582044.15e-77PREDICTED: LOB domain-containing protein 24-like
SwissprotP594687e-43LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A1U8HND51e-75A0A1U8HND5_CAPAN; LOB domain-containing protein 24-like
STRINGSolyc01g109240.1.15e-86(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52772039
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.13e-45LOB domain-containing protein 24
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]