PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g109240.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | LBD | ||||||||
Protein Properties | Length: 122aa MW: 14015.2 Da PI: 8.2656 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126 | 1.9e-39 | 5 | 105 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk lrrkC+++C++ pyfp ++p++f +vh+++Gasnv k+l++++e++r d+++sl+yeA +r+++PvyG+vg+i+ l++++ +++ Solyc01g109240.1.1 5 RCAACKQLRRKCPSNCIFLPYFPPNNPQRFLYVHRIYGASNVGKMLQQVEEHQRGDVADSLYYEAYCRIKNPVYGCVGIITVLHEEIYHVQ 95 6****************************************************************************************** PP DUF260 92 aelallkeel 101 +la++++++ Solyc01g109240.1.1 96 CQLAKVQAQI 105 ******9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.292 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.3E-39 | 5 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MSSTRCAACK QLRRKCPSNC IFLPYFPPNN PQRFLYVHRI YGASNVGKML QQVEEHQRGD 60 VADSLYYEAY CRIKNPVYGC VGIITVLHEE IYHVQCQLAK VQAQIDLLYQ NGLYTLDPSF 120 Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-35 | 2 | 105 | 8 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-35 | 2 | 105 | 8 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g109240.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016582044.1 | 5e-77 | PREDICTED: LOB domain-containing protein 24-like | ||||
Swissprot | P59468 | 7e-43 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A1U8HND5 | 1e-75 | A0A1U8HND5_CAPAN; LOB domain-containing protein 24-like | ||||
STRING | Solyc01g109240.1.1 | 5e-86 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5277 | 20 | 39 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 3e-45 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g109240.1.1 |
Publications ? help Back to Top | |||
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