PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g106030.2.1 | ||||||||
Common Name | LOC101251931 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GATA | ||||||||
Protein Properties | Length: 327aa MW: 35018.7 Da PI: 6.3741 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 47.9 | 1.9e-15 | 244 | 279 | 1 | 34 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++C+ ++ Tp++Rrgp g+++LCnaCGl+++ kg Solyc01g106030.2.1 244 CRHCNISSksTPMMRRGPAGPRSLCNACGLKWANKG 279 *****99999**********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 14.818 | 109 | 144 | IPR010399 | Tify domain |
SMART | SM00979 | 3.6E-12 | 109 | 144 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.0E-12 | 112 | 143 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.126 | 176 | 218 | IPR010402 | CCT domain |
Pfam | PF06203 | 4.9E-16 | 176 | 218 | IPR010402 | CCT domain |
SMART | SM00401 | 2.7E-11 | 238 | 291 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.65E-11 | 239 | 289 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.2E-14 | 242 | 285 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.09E-13 | 243 | 291 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 244 | 271 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.8E-13 | 244 | 279 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 8.59 | 248 | 295 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MAEANRRANM YGRETMNAAL HQDRHQQTQI DDDDDDDVVA AVGGGGSGGG GIESMDNPTP 60 HIRYDQHHHS HSHALHNGGA GGSMEMNGVE GVSHNALYGP PSEIVPTAGS GASDQLTLSF 120 QGEVYVFDAV SPEKVQAVLL LLGGYEVPPG IPAVNVVPQS QRASGDFPGR LNQPERAASL 180 NRFREKRKER CFDKKIRYTV RKEVAMRMQR KKGQFTSAKS IPDEVGSSAD WNEGSGQEEQ 240 ETSCRHCNIS SKSTPMMRRG PAGPRSLCNA CGLKWANKGI LRDLSKVPAP GTQDQTAKPG 300 EQSHGEPNGS DDMAAIITPD DNNPVG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.14182 | 0.0 | callus| floral bud| flower| fruit| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g106030.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC233128 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-245n21 map 1, complete sequence | |||
GenBank | AC240866 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-210o18 map 1, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004230570.1 | 0.0 | GATA transcription factor 24 | ||||
Swissprot | Q8GXL7 | 3e-78 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | A0A3Q7FBQ2 | 0.0 | A0A3Q7FBQ2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g106030.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2672 | 23 | 48 | Representative plant | OGRP831 | 16 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 9e-81 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g106030.2.1 |
Entrez Gene | 101251931 |
Publications ? help Back to Top | |||
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