PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g091420.1.1 | ||||||||
Common Name | LOC101256138 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | LBD | ||||||||
Protein Properties | Length: 272aa MW: 28025.9 Da PI: 7.5992 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.2 | 3.2e-39 | 40 | 140 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ ++++eA+ar+rdPvyG+v++i++lq+q+++l Solyc01g091420.1.1 40 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVLTICFEAQARLRDPVYGCVAHIFALQHQVANL 130 7***********************9989*************************************************************** PP DUF260 91 kaelallkee 100 +ael++l+++ Solyc01g091420.1.1 131 QAELSYLQAH 140 *****99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.668 | 39 | 141 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-38 | 40 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MSSNNHSSST GGVSAPGGGV TSGSTSSGGG SGGGGGGGGP CGACKFLRRK CVAGCIFAPY 60 FDSEQGAAHF AAVHKVFGAS NVSKLLLHIP VHKRLDAVLT ICFEAQARLR DPVYGCVAHI 120 FALQHQVANL QAELSYLQAH LTTLELPTPP PLPPPPPPPP QQPQTMLHQP SLTIADLPTA 180 GPSLPAAYDL SSLFDPMVIQ PSWAMQQQPR PPPPLPLDPR HFGGARAPMD MSPSTGGGGG 240 DLQELARELL HRHGSATVPC TESSALPPQT K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-36 | 36 | 141 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-36 | 36 | 141 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers (PubMed:12068116). Expressed in vascular tissues of hypocotyls, leaves, roots, developing floral organs and siliques (PubMed:19088331). {ECO:0000269|PubMed:12068116, ECO:0000269|PubMed:19088331}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g091420.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004231166.1 | 0.0 | LOB domain-containing protein 30 | ||||
Swissprot | O81323 | 2e-78 | LBD30_ARATH; LOB domain-containing protein 30 | ||||
TrEMBL | A0A3Q7EKM9 | 0.0 | A0A3Q7EKM9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g091420.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 | Representative plant | OGRP405 | 15 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00220.1 | 1e-68 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g091420.1.1 |
Entrez Gene | 101256138 |
Publications ? help Back to Top | |||
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