PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G205100.1.p
Common NameLOC101777226, SETIT_011086mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 200aa    MW: 21028.1 Da    PI: 6.5255
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G205100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.7e-171765255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+G+r  +++g+Wv+eIr+p++   ++r++lg+f tae+Aa a++ a+++l+g
  Seita.7G205100.1.p 17 YYRGIR--SRSGKWVSEIREPRK---TRRIWLGTFPTAEMAAVAYDVAARALRG 65
                        59***6..678*********843...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.4E-291779IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-271774IPR001471AP2/ERF domain
PROSITE profilePS5103220.3631773IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-181774IPR016177DNA-binding domain
PfamPF008473.5E-91865IPR001471AP2/ERF domain
CDDcd000183.88E-261875No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MSDHRGPASP RTGKHPYYRG IRSRSGKWVS EIREPRKTRR IWLGTFPTAE MAAVAYDVAA  60
RALRGPDTAL NFPDLAASRP APASTSADDI RAAAAEAAAA LQEPDRHSAQ GGGIAPAAAG  120
GTAQQQPGGS SAAAHQQEGS SSAGSQYYLD EEALFETPQY LRNMAAGMMM SPPRLGRNSS  180
DDSPDPSEAG DSLWSYRDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-131373363ATERF1
3gcc_A7e-131373363ATERF1
5wx9_A1e-1214731172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G205100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557511e-136EU955751.1 Zea mays clone 1544743 ap2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976542.11e-140ethylene-responsive transcription factor ERF025
SwissprotQ9FJ907e-48ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLK3YA441e-139K3YA44_SETIT; Uncharacterized protein
STRINGSi011086m1e-140(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-34ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]